Scaffold SL_6KL_011_BRINEDRAFT_1029011

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SL_6KL_011_BRINEDRAFT_1029011

Scaffold SL_6KL_011_BRINEDRAFT_1029011

Overview

Basic Information
Taxon OID	3300000361 Open in IMG/M
Scaffold ID	SL_6KL_011_BRINEDRAFT_1029011 Open in IMG/M
Source Dataset Name	Alkaline brine water microbial communities from Soda crystalizer, Kulunda Steppe, Russia - 6KL_011_BRINE
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1767
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Brine Water → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location Name	Russia: Kulunda Steppe
Coordinates	Lat. (^o)	51.64	Long. (^o)	79.73	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079661	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_6KL_011_BRINEDRAFT_10290112	F079661	GAG	MSTTIQIPTDLRKRLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEIRDMVQRELETVQRH*

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