NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold diamDraft_1025462

Scaffold diamDraft_1025462


Overview

Basic Information
Taxon OID3300000900 Open in IMG/M
Scaffold IDdiamDraft_1025462 Open in IMG/M
Source Dataset NameDiamante Lake Red Biofilm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterINDEAR Instituto de Agrobiotecnologia Rosario
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)576
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Microbial Mats → Red Biofilm → Red Biofilm Microbial Communities From Diamante Lake, Argentina

Source Dataset Sampling Location
Location NameArgentina: Catamarca Province
CoordinatesLat. (o)-26.034111Long. (o)-67.039458Alt. (m)Depth (m).5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062489Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
diamDraft_10254622F062489AGGAGGVTGPDAIILRERVAEGPTRRIVWHPLTTGGYERREQLWRQSIEGWHTTGTEIVTDLTIDRPEGRR*
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