Scaffold JGI12031J13088_104174

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12031J13088_104174

Scaffold JGI12031J13088_104174

Overview

Basic Information
Taxon OID	3300000974 Open in IMG/M
Scaffold ID	JGI12031J13088_104174 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Atlantic Ocean - MP1092
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	881
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Indian Ocean
Coordinates	Lat. (^o)	-29.81	Long. (^o)	82.62	Alt. (m)		Depth (m)	4000.29
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085813	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12031J13088_1041742	F085813	N/A	MDQFEIIWILATVIGALNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL*

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