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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001125 Open in IMG/M |
| Scaffold ID | JGI11931J13222_1015888 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Deep Atlantic Ocean - MP0204 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 550 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South of Cape Verde, Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 7.33 | Long. (o) | -26.0 | Alt. (m) | Depth (m) | 4002.51 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002753 | Metagenome / Metatranscriptome | 532 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI11931J13222_10158881 | F002753 | N/A | VNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESVNNTVSDRFTSAAVPVEIESVNNTVSDRFTPAAVDIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |