Sample 3300001125

Overview

Basic Information
IMG/M Taxon OID	3300001125 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054500 \| Ga0000814
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP0204
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	43567243
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Nitrosarchaeum koreense	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
Not Available	3
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	South of Cape Verde, Atlantic Ocean
Coordinates	Lat. (^o)	7.33	Long. (^o)	-26.0	Alt. (m)	N/A	Depth (m)	4002.51
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y
F032684	Metagenome / Metatranscriptome	179	Y
F041257	Metagenome / Metatranscriptome	160	N
F049927	Metagenome	146	Y
F054946	Metagenome / Metatranscriptome	139	Y
F076187	Metagenome	118	Y

Family

Category

Number of Sequences

3D Structure?

F002753

Metagenome / Metatranscriptome

532

F032684

Metagenome / Metatranscriptome

179

F041257

Metagenome / Metatranscriptome

160

F049927

Metagenome

146

F054946

Metagenome / Metatranscriptome

139

F076187

Metagenome

118

Scaffold	Taxonomy	Length	IMG/M Link
JGI11931J13222_1000318	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Nitrosarchaeum koreense	6446	Open in IMG/M
JGI11931J13222_1002647	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1971	Open in IMG/M
JGI11931J13222_1007568	Not Available	898	Open in IMG/M
JGI11931J13222_1015888	All Organisms → cellular organisms → Eukaryota	550	Open in IMG/M
JGI11931J13222_1016500	Not Available	539	Open in IMG/M
JGI11931J13222_1018347	Not Available	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI11931J13222_1000318

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Nitrosarchaeum koreense

6446

Open in IMG/M

JGI11931J13222_1002647

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae

1971

Open in IMG/M

JGI11931J13222_1007568

Not Available

898

Open in IMG/M

JGI11931J13222_1015888

All Organisms → cellular organisms → Eukaryota

550

Open in IMG/M

JGI11931J13222_1016500

Not Available

539

Open in IMG/M

JGI11931J13222_1018347

Not Available

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI11931J13222_1000318	JGI11931J13222_10003181	F054946	LVFLYNSDYERGVPHLPQNFAVGFSLVPQLLQDED
JGI11931J13222_1002647	JGI11931J13222_10026476	F076187	MPDCINPALTVSVIICPDGLVSLAITHFFEFISXEKFFENFKTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVPR*
JGI11931J13222_1007568	JGI11931J13222_10075682	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEE
JGI11931J13222_1015888	JGI11931J13222_10158881	F002753	VNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESVNNTVSDRFTSAAVPVEIESVNNTVSDRFTPAAVDIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESV
JGI11931J13222_1016500	JGI11931J13222_10165001	F049927	ILLIILAAKIVKIAVPTTYKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT*
JGI11931J13222_1018347	JGI11931J13222_10183471	F032684	MRLLCTLRVLALIDKFKSNFSLFRAEEVIFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFVKQNEITA

Scaffold ID

Protein ID

Family

Sequence

JGI11931J13222_1000318

JGI11931J13222_10003181

F054946

LVFLYNSDYERGVPHLPQNFAVGFSLVPQLLQDED

JGI11931J13222_1002647

JGI11931J13222_10026476

F076187

MPDCINPALTVSVIICPDGLVSLAITHFFEFISXEKFFENFKTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVPR*

JGI11931J13222_1007568

JGI11931J13222_10075682

F041257

MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEE

JGI11931J13222_1015888

JGI11931J13222_10158881

F002753

VNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESVNNTVSDRFTSAAVPVEIESVNNTVSDRFTPAAVDIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESV

JGI11931J13222_1016500

JGI11931J13222_10165001

F049927

ILLIILAAKIVKIAVPTTYKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT*

JGI11931J13222_1018347

JGI11931J13222_10183471

F032684

MRLLCTLRVLALIDKFKSNFSLFRAEEVIFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFVKQNEITA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001125: Marine microbial communities from the Deep Atlantic Ocean - MP0204

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences