Scaffold TuiMalila_1008770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TuiMalila_1008770

Scaffold TuiMalila_1008770

Overview

Basic Information
Taxon OID	3300001676 Open in IMG/M
Scaffold ID	TuiMalila_1008770 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Tui Malila, Lau Basin, Pacific Ocean
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2872
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tui Malila, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Tui Malila, Lau Basin, Pacific Ocean
Coordinates	Lat. (^o)	-21.99002	Long. (^o)	-176.568744	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F096028	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
TuiMalila_10087701	F096028	N/A	SHITISVDFRVDWASFELIDGDFHSHSFGERGDWNDSMLDEN*

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