Scaffold JGI24741J21665_1003217

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24741J21665_1003217

Scaffold JGI24741J21665_1003217

Overview

Basic Information
Taxon OID	3300001915 Open in IMG/M
Scaffold ID	JGI24741J21665_1003217 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3971
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033870	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24741J21665_10032175	F033870	GGAG	MNVSMEAPRTPQHDLVAMTAALRGALLQRVEQGIQSSGLTNYFMYIIAKRLMFAGPQTSASLSEQLRQDQHIVRDNLRLMLERQMVQQDGDAWVITEAGRSAMSAANDSGTQVLEDIRSAIGASACDQLVAGMRGALAALRAA*

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