NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2266_1053034

Scaffold GOS2266_1053034


Overview

Basic Information
Taxon OID3300001956 Open in IMG/M
Scaffold IDGOS2266_1053034 Open in IMG/M
Source Dataset NameMarine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1753
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameRangirora Atoll, Polynesia Archipelagos
CoordinatesLat. (o)-15.143611Long. (o)-147.435Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058913Metagenome134Y
F062820Metagenome / Metatranscriptome130N
F080142Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
GOS2266_10530342F062820AGGMTLVHAVYVGGMRTMNKTIWKRIDIGSLCVHCGKDTAFGHSDMLFVDRIPADADLLDDDGNPIGVKEGYMCRECQYVDEDDFFHEDNISN*
GOS2266_10530345F058913AGGAGGMKLTKEEARWLDNKWNDFYYYFDVETMYPKDQEIYRKIGQKLSEVKQ*
GOS2266_10530346F080142GGAGGMKVGAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEYEHEVWSYNDALQKIKTLVQLQEQN
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