NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2233_1078369

Scaffold GOS2233_1078369


Overview

Basic Information
Taxon OID3300001969 Open in IMG/M
Scaffold IDGOS2233_1078369 Open in IMG/M
Source Dataset NameMarine microbial communities from Yucatan Channel, Mexico - GS017
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1933
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameYucatan Channel, Mexico
CoordinatesLat. (o)20.5225Long. (o)-85.41361Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058913Metagenome134Y
F080142Metagenome115Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
GOS2233_10783693F080142GGAGGMKVRAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNKFRNEVWSYNDALQKIKNLVQLQEQN
GOS2233_10783694F058913AGGAGGMNLTKEEARWLDDKWNDFYYYFQVEDMFEKDQELFQSIGKKLSEVKQ*
GOS2233_10783696F089953GGAGMEDLINEEILENIHDGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNNMSFFPTLEDAEQALSEIVQKRFEEQAQ*
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