NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2246_10121371

Scaffold GOS2246_10121371


Overview

Basic Information
Taxon OID3300001974 Open in IMG/M
Scaffold IDGOS2246_10121371 Open in IMG/M
Source Dataset NameMarine microbial communities from Upwelling, Fernandina Island, Equador - GS031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1683
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameUpwelling, Fernandina Island, Equador
CoordinatesLat. (o)-0.3011111Long. (o)-91.651665Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037416Metagenome168Y
F047115Metagenome / Metatranscriptome150Y
F050389Metagenome145N

Sequences

Protein IDFamilyRBSSequence
GOS2246_101213712F037416N/AMDEEKKIMLEVQTMMLDLIAQYPPDTQNQYCMCFKLILDCYVERLGEADTTEFLQTAMESVRSGNHGLIFTPKEKILWN*
GOS2246_101213713F047115AGGALELTRSELKTDPLGFRHQYQGIIRNLINNINICSRRWFETGDPGYGVAMKRYIKEVEELKTFIKKEELRLGYYDSDGVS*
GOS2246_101213714F050389AGGAGVKKLLIAAVAALMSASSLASIALSGKYTGTLNDSGTYTQDLTTTLVGSSAHGAVTVTLDKDFAVDDMYVESTIGGIKFKLGEVD
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