NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A17_1213572

Scaffold A17_1213572


Overview

Basic Information
Taxon OID3300002028 Open in IMG/M
Scaffold IDA17_1213572 Open in IMG/M
Source Dataset NamePermafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)650
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil → Permafrost And Active Layer Soil Microbial Communities From Mcgill Arctic Research Station (Mars), Canada, For Enrichment Studies

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067244Metagenome / Metatranscriptome126Y
F097812Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
A17_12135721F097812N/ARTLDHFNVPEREKGEALAAFNGWKGEVTAGSDPDAVNWRRWN*
A17_12135722F067244AGGAGGMCLTCGCLLPHEDHGNREYLTIEGLERSAAIDGYDLDTALQNLAKTVEVAKKETDHDHR*

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