NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SA3_10050191

Scaffold SA3_10050191


Overview

Basic Information
Taxon OID3300002065 Open in IMG/M
Scaffold IDSA3_10050191 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Galicia, Spain - SA3-P2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameVigo, Galicia, Spain
CoordinatesLat. (o)42.52Long. (o)-8.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059010Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
SA3_100501912F059010N/AMTRQELLNQVAEKLERCEHTPIVTEKEELQIWAMLLNKVYEETFKTKDVK*
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