NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DRAFT_10001120

Scaffold DRAFT_10001120


Overview

Basic Information
Taxon OID3300002597 Open in IMG/M
Scaffold IDDRAFT_10001120 Open in IMG/M
Source Dataset NameCamel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11953
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Camel Rumen → Camel Rumen Microbial Communities From Jandagh-Isfahan, Iran

Source Dataset Sampling Location
Location NameJandaq, Isfahan Province, Iran
CoordinatesLat. (o)34.041281Long. (o)54.414582Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067315Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
DRAFT_1000112029F067315N/AMNFDKNLEILSNLLQIKSYEILVEDFNNTDLMKYLKHQDALLDKIIEQNDQIISLLKGEKK*
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