NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DRAFT_10597278

Scaffold DRAFT_10597278


Overview

Basic Information
Taxon OID3300002597 Open in IMG/M
Scaffold IDDRAFT_10597278 Open in IMG/M
Source Dataset NameCamel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Camel Rumen → Camel Rumen Microbial Communities From Jandagh-Isfahan, Iran

Source Dataset Sampling Location
Location NameJandaq, Isfahan Province, Iran
CoordinatesLat. (o)34.041281Long. (o)54.414582Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102240Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
DRAFT_105972781F102240N/ATEQDSDAGVLAEYLVGDILGCLPPTRKENSPFDLTTKSGATIEVKATTHRCLRKGRTPYYRWKVTTQSEALKGNRPIADVWLFLIANFPKARSGTPRVLQAFDLRNWTCSLVSGEQLRTAGCTSYVSESTLRRLGVDSFPLGELKKMFPS*
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