Scaffold Ga0005486J37273_101617

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0005486J37273_101617

Scaffold Ga0005486J37273_101617

Overview

Basic Information
Taxon OID	3300002653 Open in IMG/M
Scaffold ID	Ga0005486J37273_101617 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF135 (Metagenome Metatranscriptome, Counting Only)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	585
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.53312	Long. (^o)	-72.189707	Alt. (m)		Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003787	Metagenome / Metatranscriptome	468	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005486J37273_1016171	F003787	N/A	SK*SDFQHCSPPACTVLNIAIGSAGRFACLLPDNGFRRLPDQCFQTGRGLLSRSGPDARNSLSLVRNGRSFRSLHSEVNVPGLLLRFQLAASTARLALLLRYPNRLAPVWAASMLLARCSLRDSLEDRASSLHSPWGLLPPAGSKRSAGLAAFRPAFRIRPISLRSPQPVSISSVSAADHRFRSATFPGACCSSN

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