Sample 3300002653

3300002653: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF135 (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information
IMG/M Taxon OID	3300002653 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056702 \| Ga0005486
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF135 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6121968
Sequencing Scaffolds	41
Novel Protein Genes	43
Associated Families	39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	31
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Glires → Rodentia → Myomorpha → Muroidea → Muridae → Murinae → Mus → Mus → Mus musculus	1
All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Myroides → Myroides odoratimimus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group → Streptomyces canus	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.53312	Long. (^o)	-72.189707	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000396	Metagenome / Metatranscriptome	1185	Y
F000549	Metagenome / Metatranscriptome	1036	Y
F001273	Metagenome / Metatranscriptome	733	Y
F002654	Metagenome / Metatranscriptome	539	Y
F003787	Metagenome / Metatranscriptome	468	Y
F004473	Metagenome / Metatranscriptome	436	Y
F009688	Metagenome / Metatranscriptome	314	Y
F010305	Metagenome / Metatranscriptome	305	Y
F014145	Metagenome / Metatranscriptome	265	Y
F016972	Metagenome / Metatranscriptome	243	Y
F017072	Metagenome / Metatranscriptome	243	Y
F018933	Metagenome / Metatranscriptome	232	N
F019794	Metagenome / Metatranscriptome	227	N
F026808	Metagenome / Metatranscriptome	196	Y
F029031	Metagenome / Metatranscriptome	189	Y
F030305	Metagenome / Metatranscriptome	185	N
F031389	Metagenome / Metatranscriptome	182	Y
F033437	Metagenome / Metatranscriptome	177	Y
F033440	Metagenome / Metatranscriptome	177	Y
F033813	Metagenome / Metatranscriptome	176	Y
F034577	Metagenome / Metatranscriptome	174	Y
F036049	Metagenome / Metatranscriptome	170	Y
F038098	Metagenome / Metatranscriptome	166	Y
F038498	Metagenome / Metatranscriptome	165	Y
F055474	Metagenome / Metatranscriptome	138	Y
F057922	Metagenome / Metatranscriptome	135	N
F059015	Metagenome / Metatranscriptome	134	Y
F059538	Metagenome / Metatranscriptome	133	N
F068857	Metagenome / Metatranscriptome	124	Y
F069734	Metagenome / Metatranscriptome	123	N
F076700	Metagenome / Metatranscriptome	117	N
F078064	Metagenome / Metatranscriptome	116	N
F080954	Metagenome / Metatranscriptome	114	Y
F089618	Metagenome / Metatranscriptome	108	N
F089654	Metagenome / Metatranscriptome	108	Y
F092496	Metagenome / Metatranscriptome	107	Y
F096400	Metagenome / Metatranscriptome	104	Y
F102643	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005486J37273_100003	Not Available	703	Open in IMG/M
Ga0005486J37273_100053	Not Available	585	Open in IMG/M
Ga0005486J37273_100069	Not Available	784	Open in IMG/M
Ga0005486J37273_100106	Not Available	822	Open in IMG/M
Ga0005486J37273_100109	Not Available	565	Open in IMG/M
Ga0005486J37273_100183	Not Available	561	Open in IMG/M
Ga0005486J37273_100227	Not Available	561	Open in IMG/M
Ga0005486J37273_100259	Not Available	588	Open in IMG/M
Ga0005486J37273_100266	Not Available	575	Open in IMG/M
Ga0005486J37273_100421	Not Available	628	Open in IMG/M
Ga0005486J37273_100490	Not Available	521	Open in IMG/M
Ga0005486J37273_100575	Not Available	531	Open in IMG/M
Ga0005486J37273_100741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	706	Open in IMG/M
Ga0005486J37273_100781	Not Available	574	Open in IMG/M
Ga0005486J37273_101005	Not Available	817	Open in IMG/M
Ga0005486J37273_101185	All Organisms → cellular organisms → Eukaryota	3349	Open in IMG/M
Ga0005486J37273_101197	Not Available	760	Open in IMG/M
Ga0005486J37273_101459	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	816	Open in IMG/M
Ga0005486J37273_101467	Not Available	642	Open in IMG/M
Ga0005486J37273_101543	Not Available	576	Open in IMG/M
Ga0005486J37273_101617	Not Available	585	Open in IMG/M
Ga0005486J37273_101735	Not Available	518	Open in IMG/M
Ga0005486J37273_101809	Not Available	815	Open in IMG/M
Ga0005486J37273_101951	Not Available	576	Open in IMG/M
Ga0005486J37273_102022	Not Available	502	Open in IMG/M
Ga0005486J37273_102032	Not Available	586	Open in IMG/M
Ga0005486J37273_102094	Not Available	577	Open in IMG/M
Ga0005486J37273_102339	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Glires → Rodentia → Myomorpha → Muroidea → Muridae → Murinae → Mus → Mus → Mus musculus	725	Open in IMG/M
Ga0005486J37273_102448	All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens	589	Open in IMG/M
Ga0005486J37273_102684	Not Available	573	Open in IMG/M
Ga0005486J37273_103174	Not Available	589	Open in IMG/M
Ga0005486J37273_103259	Not Available	550	Open in IMG/M
Ga0005486J37273_103441	Not Available	509	Open in IMG/M
Ga0005486J37273_104155	Not Available	593	Open in IMG/M
Ga0005486J37273_104276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	684	Open in IMG/M
Ga0005486J37273_104582	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Myroides → Myroides odoratimimus	574	Open in IMG/M
Ga0005486J37273_104817	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1455	Open in IMG/M
Ga0005486J37273_105228	Not Available	501	Open in IMG/M
Ga0005486J37273_105455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group → Streptomyces canus	899	Open in IMG/M
Ga0005486J37273_105950	Not Available	560	Open in IMG/M
Ga0005486J37273_107083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005486J37273_100003	Ga0005486J37273_1000031	F057922	LLNLNLCGIRRDSYRLLRIPGGSGGQGTVTVPQRRSTKMVPSDPANSPFSDWHAQSEHSTQGSGDVVLLLPVAAFIRPRISAPEPICLFYLLEARVSKQTFARPHRLLPFESHRSEVNAPALSLRRNSELFFQSVRPTPILACALTPSGYVRCPKPVTVFQAQSSQTSIQLPLPFRTFILPDRSAQSVARSEKLAFVSGPFSLRSPQASIIFNNYPLTDHRSRFATVYQAYC
Ga0005486J37273_100053	Ga0005486J37273_1000531	F059015	SRVHGTIQRPVCMRTFALQPDVRDKIAHRSPSPLFSMRQVIALSRLHHTSLSD*HPAGAGSSIRPFARSQRRFRHHCEVNVPGLHLRFHIENLCESVRLQALSLRSVSRPNRGAVNAQNPLSAPISNTPDLSPISTPLQVLLRKPSGSKRSTGSISGNPSYQTFDCPLLPATSSFDSATDQRLKLASFGLTYRS
Ga0005486J37273_100069	Ga0005486J37273_1000691	F076700	SSLAVQPVLRPPATPVAALQLSLVLGSSGCAGTVTLTCVSALHSGSTSGQPSGSDRFRVLRLDRLQTSDSHRLFRSSARPLAIYQACARSWFHRACARQSWFHLARAAWPFLRLGRQPTSDSHRCRSLARLAASSGLRLMLPLPLVWLRVQFAPVASPYAFTGREPLGLRLVVPSPAEPLMHSLFPPNLASPAKPSMSIPFPLALASSGIFQLNIFRLASAFALLVRPAIPLWLAPQVSPSVRAGGHPPVLTGCPLRQP
Ga0005486J37273_100106	Ga0005486J37273_1001061	F030305	PLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQRTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRT
Ga0005486J37273_100109	Ga0005486J37273_1001091	F004473	MKPVERFDPEGLKQPEGEWRSVVIMKAPEIGADNGSKVMNSPGFGFETKPSGGALDRTGSRRSFGVEAKAQVGSVDLVMVAKASLRASERPFRVSGSGGMHETRTRFLH*
Ga0005486J37273_100183	Ga0005486J37273_1001831	F000396	PPACNGTELCPQDRRVSSLQLPAAFFRTLRINAYGLTCQLSWLEPVSRSGLSLSRNDCPSPGHHFEVEAPDLLLQHPAVRSSCPFRFRFPYVLQFALVRARSIPKPRCLTPVRHSQPFFGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTGSPLQAR*
Ga0005486J37273_100227	Ga0005486J37273_1002271	F004473	VVKLVERFDPEGWKQPEGEWRPGGTMRAPDIGANNGSKVMKSPGIGFETEPSGGAFGRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPFRVSGSGRMQVLEPRLLH*
Ga0005486J37273_100259	Ga0005486J37273_1002591	F009688	GLVAGPSNALRPWILSEAFQLASAGGCATGLPTRSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGMPGRRVLPDACTLFVRLSAFLVTASSTFYF*
Ga0005486J37273_100266	Ga0005486J37273_1002661	F033440	RFQVTQAAIRSPAGMRGQSIACSVAEADSLAPRNRLSLTGYGSTLQNSLAYHLLEANASKRPFARPQRPFSFENYRGEVNTPAYFFGEILSFSSGPFGFMLPSSAALFTQPGMITAQSPLPSRKPRILKRPSNLRSPPGLSSLRDRSARSAARSEKLTLVSGPMTLRSPNALIVLLTKRARIAAPGSLPF
Ga0005486J37273_100421	Ga0005486J37273_1004212	F031389	LTRPRRRIAKSAVAAGERKAASRSELLPEMEKADAHRSIDPWPAKTGGGEQRAHVTPSSDAKFWPCMPVGERADRRVT
Ga0005486J37273_100490	Ga0005486J37273_1004901	F069734	MSPWLNRTLHPRLTPRMNLRVHSGHGKLGMASGALLVPIRRFTIGKPTTNSPTETLTYAFYHAGVA
Ga0005486J37273_100575	Ga0005486J37273_1005751	F089654	RTFALRPDGSDDRQSLATATFQPATGHSNQRVLNELNILPEPETRYDLSLAHNDACATIARSMFLVCTFVSLSKTCANPFDPELFRSVRFRGRYGATSLPDTRFPRRSPTLPIYPRSPLPFRSFLKTLRIEVFNRFPMREARLARHPIAVRSPLLPLSIPLRISASNSLRPARLSF
Ga0005486J37273_100658	Ga0005486J37273_1006582	F000203	NWGMGVRHSLFPVLAFGAILAASFPTPFSTASGVIGLIAGPSSALRSLNFE*
Ga0005486J37273_100741	Ga0005486J37273_1007411	F089618	LDGLVVQPVLRPSATPAANLQLSLPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRALTSGWAFDAPLASTEPCIAG*
Ga0005486J37273_100781	Ga0005486J37273_1007811	F033437	PIGTMLGALAFAGLVLPDATLRGMRSSRSHGGIAPTVAGWSLLSEAFSPGSDTPCRGRHAGRGADTPASIGFHVGTVTTGTAPAFGRPFAPRYGSSLLTLRLRSLLQ*
Ga0005486J37273_101005	Ga0005486J37273_1010051	F059538	LGDRVVQPLLRPSATPAVRLQLSLPLLPLAAPVSNLRLASAALPPARPRANLPARIGVVSPGSVSGKCSAFAAYYALLIDWLLTFQLALVSGLQLGLRLLPTHIWRCPSARLVFQLPVLTGCRCNN*
Ga0005486J37273_101185	Ga0005486J37273_1011851	F002654	MLNNQTFNDKVVCQKGNSPEQVFKVPKLLLSENKEVFKSYNQEIGLEAAIF*
Ga0005486J37273_101197	Ga0005486J37273_1011972	F026808	MVKRNSQGRRRSGPAPRTPQRTQFVFEPGEQRLRLDDLFKSVSLDTGVVEGSVEPGKLLFPPSSARVLGWVVTVTSVNAEVQFRTGVGHAKTARIVVPCPFPRPAEAVNAPKVDLVGPEMTTFGVFATVTVVYKPQ*
Ga0005486J37273_101459	Ga0005486J37273_1014591	F059538	SLVNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAVYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN*
Ga0005486J37273_101467	Ga0005486J37273_1014671	F078064	ADSEDARTGGYGILIDGLPAMQGSVEVRGASKAQPEVEAQGASRVNRNR*
Ga0005486J37273_101543	Ga0005486J37273_1015431	F017072	GSGRIHQFLWRCSRTVKMRMRDLAARSDEKPFRVESSSPGKFRFRANRSHPEGEQLLLCISTVRTALAGAIKVETAQRKTPKGGQRERTHREEHEAPAGFMKNFRAPAMLKTTPLDCEIKCSLREKRRDPWLGANASPKAMADPKPVVKTREKRESQACLDLVCRPVAQPPVEASKASLKIRASQGAGRP
Ga0005486J37273_101617	Ga0005486J37273_1016171	F003787	SK*SDFQHCSPPACTVLNIAIGSAGRFACLLPDNGFRRLPDQCFQTGRGLLSRSGPDARNSLSLVRNGRSFRSLHSEVNVPGLLLRFQLAASTARLALLLRYPNRLAPVWAASMLLARCSLRDSLEDRASSLHSPWGLLPPAGSKRSAGLAAFRPAFRIRPISLRSPQPVSISSVSAADHRFRSATFPGACCSSN
Ga0005486J37273_101654	Ga0005486J37273_1016541	F102643	ILGRPIAKKYSDGKVKRTLKRRSKVLETVKRETDGASNYPMGIQIIHFYSASQLVNKSTECLVGWLLGYYVRYLVCMFVNIKYKRGIFHGGR*
Ga0005486J37273_101735	Ga0005486J37273_1017351	F033813	SWNAEGGRKKISGAPRIIPGDWGKVESGWLTQPLKRARKG*
Ga0005486J37273_101809	Ga0005486J37273_1018091	F019794	LDESVVQPVLRPPATPETSLQLALPLPPLAAPASNLRLASAALRPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPFVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGSHRLLLQPSACASCCYDSPACAGRRPFAIPAANFRLASDVTPSSFTGFDSPDLRRMFLPPVGPLVHPLLQPNLASPAVPSMSIQSPPVLAPSGSASFNNLRLASVFAMSGATSDPSAAFASGFTLWLGLRRFSDSRQLFVPPAIPATNSQCPT
Ga0005486J37273_101951	Ga0005486J37273_1019511	F038498	QGSRYD*ANHRHARRSIRGESVFEFPDHRSPSPFFNMRRVNAATCEKLKSLRRNRRLETAFHSLTTTFSRHCEVKVPDLLLRLRAENLTEPVRSRTPSLHSVFEAELGRILRPLPVVLRRSPALLRFHSISTPLEAYLQSPPDQSVQPSSSRGSLPDRTSAYPSLPLALSFRIWPSDHRSGCALSRPTNRS
Ga0005486J37273_102022	Ga0005486J37273_1020221	F055474	MPFGIKAFGQFSLPEVHLRKTPDFLSLPVARLHINDDDRGSTFQVRYVSRGSLFS
Ga0005486J37273_102032	Ga0005486J37273_1020321	F031389	LTRLRRRTERSAVAAGEQKAVSRIELLPERSKADAHQSIDPWLNKIGCGEQRAYVTPFPDAKF*
Ga0005486J37273_102094	Ga0005486J37273_1020941	F036049	MVALGTPLLATVLLGGSIMGQPYTVRVACTVETDVACPALGPGNSTDFIVRNFTDVGLATLEIPEAQLLPPTDSANEMTAHHVWIPWIETHWRLQDSQARSTHETCAGEVAQLYFSPAWTALDWLRVRLWQVPSLQPQRCAIAPTVCLIGC*
Ga0005486J37273_102339	Ga0005486J37273_1023391	F018933	RVAGLSLCFSRRSRIAPCSTLDSLFLPRIAPRSVLIDLCCSPICTGAQHLEPLPRLRIAPSSTLSVPSRSQIAPRSALPAPCRSWIAPRSTIDTQCRSTDISVRLHFAPCAVHGLLRAQHFRLRPAHLLCVRRLHFIRFADCSAPLTLCPVQLTDRSVLNT
Ga0005486J37273_102448	Ga0005486J37273_1024481	F034577	VRRAACIFITGPFARAGVFLARSGFRLREFRSGVKGPHLTLRSLTNRLILLVRPFSSATCRRFAPAAGGIHASDPLHSCRFALPAARPISTPLQEFSLPPAQSVRLVTRPSGPPSRSARSSFAPRSRSISSWTMDQRSRSATFPEACCSSNL
Ga0005486J37273_102684	Ga0005486J37273_1026841	F014145	TDFQPDSLPACTALSCANKSAGRFASPLPDGRFLQPPDQCFLARRLLPLARNRLLVTAFRSPATVAASRRPPFRGQSSQPATSHPSKSVFVPVRPFGSTTASRIAPVAAVSLPVARCTATTRFGLPRLRSPLPSGTFTSLGIKAFNRVCCLPVRLTNPPDFLSLPAARPD*
Ga0005486J37273_103174	Ga0005486J37273_1031741	F080954	QRSDLERTFPATQEDEDSIEVGDSPRGASRGMQDSREVGTPVPGTAGDAKFGDSRSFVAG
Ga0005486J37273_103259	Ga0005486J37273_1032591	F029031	QGTANLVSGSDPGTLIRRQTNKTERRRGAKGHRAEHKGELLKRQTG*
Ga0005486J37273_103441	Ga0005486J37273_1034411	F038098	PEGCSLVPRRALRPHPGVEVSLAFSLDPAPRGFRFGIRAIPAVPTRVVSFKLQVLTCQLELACASYSASSPCVSIRLARRHFLLDLPRTRHLTVHPCGLPVRLPPLRASGCARAVLRYLPQVYCRLIFMCAGLRQVPLDSPSEPLPCGFDPAVRNPLPSPRASSYFQDL
Ga0005486J37273_104155	Ga0005486J37273_1041551	F036049	MVALGTPLLATMLLGGPLAGPDYTVHVACTVETDAACPALGPGNSTDFIVRNFTDVGLAALEIPANQLLSPMDSAYEMSIHHEWIPWLETPWRLLNSQARSTHETCAGEVAQLHLNPALTDLHWLRVRLWQIPSLQPQRCAIAPTVCLTDC*
Ga0005486J37273_104276	Ga0005486J37273_1042761	F096400	VQVRTPARQPGLRVRPDNVPSRYKAKQTRLGRTLPAAYTGTRH
Ga0005486J37273_104582	Ga0005486J37273_1045821	F001273	MRIDLYTKTILTIIALLLAVIVMKPLFQPQPALAEGKYAGVQFSYSGGNHAFFDARTGDVWEYGEDGHFRQHHKVHEFGKDHDH*
Ga0005486J37273_104817	Ga0005486J37273_1048173	F016972	VRLTPLTDEIPVVNLYLTINGADRVSFGAKTSRYGPYELGYRRATKIFTK*
Ga0005486J37273_105228	Ga0005486J37273_1052282	F010305	LKRAEKPHSKFSDRKALDGPATRPGTPLAVENGVGKLTAPEKGAPNVSMGKRDWRTPIP
Ga0005486J37273_105455	Ga0005486J37273_1054551	F092496	MSTVTAVIVMTSVVEELKETETYPAIEFINRRAREFASSGEFVEVSRWARGKHPESLIFIAGLNFCDLGLLRTVLESAPWRSPDLVQILTRAGEAKRFELCAWPKIAGRSAAPSLA*
Ga0005486J37273_105950	Ga0005486J37273_1059501	F068857	LRVLRSEDGNGLSAMNTPGGVKNAVEDGSWRPNGLEQEFRIPAKR*
Ga0005486J37273_107083	Ga0005486J37273_1070831	F000549	MRPQLQKKLARANRIDGSIVLYRSAARSQLKALRPLSRGEPWWNMVFRVPLFLRTLLRLVFVCPHWHKGPPVTLRESIPTDLSGCRPVCGRGSYITCLDCGQKFAYNHRTGHLEDFWGVHDAEALAGVRRRLEGFFSPLRGLAARGWRLNLRTPMSQRVRSVHRLGVLTKGQ*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002653: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF135 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences