Basic Information | |
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Taxon OID | 3300002653 Open in IMG/M |
Scaffold ID | Ga0005486J37273_101809 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF135 (Metagenome Metatranscriptome, Counting Only) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 815 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
Coordinates | Lat. (o) | 42.53312 | Long. (o) | -72.189707 | Alt. (m) | Depth (m) | 0 to .1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019794 | Metagenome / Metatranscriptome | 227 | N |
Protein ID | Family | RBS | Sequence |
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Ga0005486J37273_1018091 | F019794 | N/A | LDESVVQPVLRPPATPETSLQLALPLPPLAAPASNLRLASAALRPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPFVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGSHRLLLQPSACASCCYDSPACAGRRPFAIPAANFRLASDVTPSSFTGFDSPDLRRMFLPPVGPLVHPLLQPNLASPAVPSMSIQSPPVLAPSGSASFNNLRLASVFAMSGATSDPSAAFASGFTLWLGLRRFSDSRQLFVPPAIPATNSQCPT |
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