Scaffold draft_100089

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold draft_100089

Scaffold draft_100089

Overview

Basic Information
Taxon OID	3300002893 Open in IMG/M
Scaffold ID	draft_100089 Open in IMG/M
Source Dataset Name	PDIso3.OB1V3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3206
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	British Columbia, Canada
Coordinates	Lat. (^o)	51.166666	Long. (^o)	-116.15	Alt. (m)		Depth (m)	.01
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000708	Metagenome / Metatranscriptome	926	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_1000892	F000708	N/A	MIKSDTTLAQIAARFAARHDVEWNRGAYVIVDRRTAHTIARLRPIPDTDRFELFYWSNVKERWTTFGNLGRMKLRLDSAHEIVENDPMFRVQRSR*

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