Scaffold JGI26049J44785_1000367

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26049J44785_1000367

Scaffold JGI26049J44785_1000367

Overview

Basic Information
Taxon OID	3300002918 Open in IMG/M
Scaffold ID	JGI26049J44785_1000367 Open in IMG/M
Source Dataset Name	High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25019
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location
Location Name	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010645	Metagenome / Metatranscriptome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26049J44785_100036715	F010645	GGAGG	MYGAWYGEVLARERQERLLEEAQERRLARMVAGPGLRARAARWLFGLALLLERRETWRAVWERLEAPR*

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