Sample 3300002918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300002918

3300002918: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D

Overview

Basic Information
IMG/M Taxon OID	3300002918 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110114 \| Gp0088361 \| Ga0008102
Sample Name	High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	149050278
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1
All Organisms → cellular organisms → Bacteria	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
Type	Engineered
Taxonomy	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000617	Metagenome	982	Y
F010514	Metagenome	302	Y
F010645	Metagenome / Metatranscriptome	301	Y
F038199	Metagenome	166	Y
F038929	Metagenome / Metatranscriptome	164	Y
F063614	Metagenome / Metatranscriptome	129	Y
F087072	Metagenome / Metatranscriptome	110	Y
F087914	Metagenome / Metatranscriptome	110	N
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI26049J44785_1000367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	25019	Open in IMG/M
JGI26049J44785_1001540	All Organisms → cellular organisms → Bacteria	11155	Open in IMG/M
JGI26049J44785_1002215	Not Available	8693	Open in IMG/M
JGI26049J44785_1005640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3992	Open in IMG/M
JGI26049J44785_1006201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	3614	Open in IMG/M
JGI26049J44785_1011812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1985	Open in IMG/M
JGI26049J44785_1022601	Not Available	1092	Open in IMG/M
JGI26049J44785_1026430	Not Available	948	Open in IMG/M
JGI26049J44785_1034028	Not Available	758	Open in IMG/M
JGI26049J44785_1042345	Not Available	628	Open in IMG/M
JGI26049J44785_1046473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	583	Open in IMG/M
JGI26049J44785_1048419	Not Available	563	Open in IMG/M
JGI26049J44785_1049186	Not Available	556	Open in IMG/M
JGI26049J44785_1055811	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26049J44785_1000367	JGI26049J44785_100036715	F010645	MYGAWYGEVLARERQERLLEEAQERRLARMVAGPGLRARAARWLFGLALLLERRETWRAVWERLEAPR*
JGI26049J44785_1001540	JGI26049J44785_100154015	F000617	VREVDLNRVEVPEGYEVLDATALARRLGIKRETVLVYLSRRNFKNIPRPNRKLAMGPVWYEASVREWERRRAGG*
JGI26049J44785_1002215	JGI26049J44785_10022159	F099151	VVIMRFREEIYKENGEIIKKFYIDDKEVTQDVYYNLTDELYENTKLKQEEHNDEICDCEECQYFLELINEIRNSSDKEALEILKSEIDFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELDDLYENGSLNEYNEDS*
JGI26049J44785_1005640	JGI26049J44785_10056405	F101010	MILFNNVYATVWEIEDKGNFVKGRISTSEKNKEGKYVNSYWFATFVGKAKEPALALSAKDRIKIASGKISNTTTGEGKDKKSFVNVVIFDFENLSNSQNNFQPNESMDDLPF*
JGI26049J44785_1006201	JGI26049J44785_10062015	F038199	MIQYTQAEFLQLLQQYNSTDRSIIKANLKRIMDIYNIKPADIISLGYSHRNVYAWTNKSTKNIPLFEQALYISTRFNFSITEFIK*
JGI26049J44785_1011812	JGI26049J44785_10118121	F063614	MTYTRLRITIDTLVKTGLEKVNVLGVEESQDDLWQIHELCNELMAFWDSELTEERIDELEEIIAELPLLQRV*
JGI26049J44785_1022601	JGI26049J44785_10226011	F038929	MIRVRTGRKIENKKFIPIRSNPTRVRKFKNKCKKILKITKHHPGFIS
JGI26049J44785_1026430	JGI26049J44785_10264302	F010514	LPKQDEIGQKRENKILVPNSVLTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMQ*
JGI26049J44785_1034028	JGI26049J44785_10340281	F010514	RKRDEICRKRENKILVPNSVHTRPGQENSERNSKKIQKIIKPLLGIIFS*
JGI26049J44785_1042345	JGI26049J44785_10423451	F010514	ILVPNSVHTRPGQENSENNSKKIQKIINPIPGIISSQNGKI*
JGI26049J44785_1046473	JGI26049J44785_10464731	F087072	MKATVFTKRIFSLELTEEELGIIAGALYFANNEDIKYFVDKYKYPCSGYSFDEVAELQEKLSEEVNKLIENR*
JGI26049J44785_1048419	JGI26049J44785_10484191	F010514	LVPNSVLTRPGQENSEKNCKKIQKIIKPLPGIIFSQNGKI*
JGI26049J44785_1049186	JGI26049J44785_10491861	F038929	MKKLVRTGRKIENNKNFIPIRTNPTPVRKFKNKCKKILKIKKHHPGLISRRNG*
JGI26049J44785_1055811	JGI26049J44785_10558111	F087914	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAA

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