Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100365 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100365 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10059
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (50.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10059

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (50.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F015079	Metagenome	257	Y
F036970	Metagenome / Metatranscriptome	169	Y
F042877	Metagenome / Metatranscriptome	157	Y
F072209	Metagenome	121	N
F097254	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10036511	F097254	AGG	MSEEDVPLFEELLPSIEKGRLTRPESKKMYAIYNRTFNANAKPCNCTGKNQRMVTKLQQAYEHRCKI*
Water_10036512	F009330	AGAAG	VTLHRYLEKNYGDLRQAAHRIAGRDGDDLLHEVILQLYQTKDETINGLLDRGQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSKQIEGWWDGDGVAAHRDQLLSHIEERLADLPWFEAEVFAIYFEEGHTLDSFAEATGISRHTLYTTIRRVRKELQGAGRQDSQADEGDGNR*
Water_10036514	F042877	GGAG	MTEGILAAIAILSFAQLGVEYFQEHQVRLFNLVILLLVCLGLAS*
Water_10036515	F072209	AGG	MASRTSSITGSTQLLLRGERRNLTPQNAWEEGTGIRTALRLHPQATRAWFLAELGQLIKFVDATKTIQDDAEMKETARALMEEFPCFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPERDHYQRHAGSVEPRKAILLTVEDLIDLGEIKPND*
Water_10036516	F009856	N/A	MKYWFEVEDAQRWGLSAAAVLAHLKYWIDRNTAAGEEPCMTQGIKEMSEYLPFLSASQIKRALGKLEAVGAIYKSQNGFDRRGTFCLGTNPAHALDESVPSMVQNRPIDEPNLARVHIETNTSKRTKSTAREELDYERPTEEQVKEYFRDIGGTDVAEQLGQEFHTHYESTGWYVSGTPMAKWKPKARSWLSRHRNKQSNERRKGFNPSGFTPDGLKDFIDHG*
Water_10036518	F015079	GGA	MYSFIISFNDGTVGEANSKSQNPPYKVGEMAYYVKTGKSPKGADKLKISKNLPPAGGYQNRPPASPNKDKEIIRGMCFKVAGMAWANQYKHKEFLTPHEVMVKDVIELAKKYEEAYNAWMKE*
Water_10036519	F036970	GAG	MTKYRQWFTAVNKAIVAQMAIQKKTQKDLADVLGIHPATINRKLKDPGQFTTGEFGQVCESLNIDLQNLQSYDTSAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100365

Overview

Ecosystem & Geography

Associated Families

Sequences