Scaffold Ga0052233_100205

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052233_100205

Scaffold Ga0052233_100205

Overview

Basic Information
Taxon OID	3300003118 Open in IMG/M
Scaffold ID	Ga0052233_100205 Open in IMG/M
Source Dataset Name	Human gut microbiome from lean and obese individuals in Granada, Spain - Obese sample
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Institute of Catalysis, The Higher Council for Scientific Research (CSIC)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2176
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Human Gut Microbial Communities From Lean And Obese Individuals In Granada, Spain

Source Dataset Sampling Location
Location Name	Granada, Spain
Coordinates	Lat. (^o)	37.17	Long. (^o)	-3.59	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0052233_1002053	F074964	N/A	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGEEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSLRTVAKCVSEYLAHESNQQ*

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