Basic Information | |
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Taxon OID | 3300003129 Open in IMG/M |
Scaffold ID | Ga0052190_102582 Open in IMG/M |
Source Dataset Name | Olavius algarvensis microbial community from off the coast of Capo di Sant Andrea, Elba, Italy |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI), Max Planck Institute |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8612 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Mytiloida → Mytiloidea → Mytilidae → Mytilinae → Mytilus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Annelida → Integument → Unclassified → Unclassified → Olavius Algarvensis → Olavius Algarvensis Microbial Communities From Capo Di Sant'Andrea Bay, Elba, Italy |
Source Dataset Sampling Location | ||||||||
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Location Name | Bay off Capo di Sant'Andrea, Elba, Italy | |||||||
Coordinates | Lat. (o) | 42.807222 | Long. (o) | 10.141111 | Alt. (m) | Depth (m) | 5.6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011565 | Metagenome | 289 | Y |
F099954 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0052190_1025821 | F011565 | N/A | MSTTPPYAKDLGNLLYHSAVVGGLTVGYSMVGKRLLKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGILPANIIKTT* |
Ga0052190_1025822 | F099954 | GGAG | MQAALVRQQKDPKKQEAGRRGAEARRKKMEALKAELVAAKEIVSETVPKEHAEQHVKPVVEQRVSERSEGTPGWIMGISLAVIIGAVLYTRRSASSERRQPHIVQHEPQERNTVVTTQSAAVQPSRSLFDM* |
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