Scaffold Ga0052244_1003756

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0052244_1003756

Scaffold Ga0052244_1003756

Overview

Basic Information
Taxon OID	3300003144 Open in IMG/M
Scaffold ID	Ga0052244_1003756 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Japan Agency for Marine-Earth Science and Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	848
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Source Dataset Sampling Location
Location Name	Northwestern Pacific Ocean
Coordinates	Lat. (^o)	41.1773	Long. (^o)	142.2013	Alt. (m)		Depth (m)	1180.5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089412	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052244_10037563	F089412	N/A	DATMAVSFTRAAEESYSGNLAYTALIATNNFFVAVLGNGNTSPKSVNGRLWGYRAKADATTYAALVQSEVLSA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.