Sample 3300003144

3300003144: Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf

Overview

Basic Information
IMG/M Taxon OID	3300003144 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111471 \| Gp0097590 \| Ga0052244
Sample Name	Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf
Sequencing Status	Permanent Draft
Sequencing Center	Japan Agency for Marine-Earth Science and Technology
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	39626905
Sequencing Scaffolds	56
Novel Protein Genes	57
Associated Families	39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	47
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_56_8b	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Sediment Microbial Communities From Deep Subseafloor
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → oceanic subsurface zone → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Northwestern Pacific Ocean
Coordinates	Lat. (^o)	41.1773	Long. (^o)	142.2013	Alt. (m)	N/A	Depth (m)	1180.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016493	Metagenome / Metatranscriptome	246	Y
F020845	Metagenome	221	Y
F022812	Metagenome / Metatranscriptome	212	Y
F031354	Metagenome / Metatranscriptome	182	Y
F037999	Metagenome / Metatranscriptome	167	Y
F041583	Metagenome	159	Y
F046170	Metagenome / Metatranscriptome	151	Y
F050157	Metagenome	145	Y
F050887	Metagenome	144	Y
F056273	Metagenome	137	Y
F058676	Metagenome	134	Y
F059633	Metagenome	133	Y
F059653	Metagenome / Metatranscriptome	133	Y
F069658	Metagenome	123	Y
F069687	Metagenome	123	Y
F070873	Metagenome	122	Y
F074420	Metagenome	119	N
F075650	Metagenome	118	Y
F076658	Metagenome	118	Y
F078009	Metagenome	117	Y
F080857	Metagenome / Metatranscriptome	114	Y
F082134	Metagenome	113	Y
F083668	Metagenome / Metatranscriptome	112	Y
F086576	Metagenome	110	Y
F087951	Metagenome	110	Y
F088228	Metagenome	109	Y
F088254	Metagenome	109	Y
F089412	Metagenome	109	Y
F089742	Metagenome	108	Y
F089904	Metagenome	108	Y
F091295	Metagenome / Metatranscriptome	107	Y
F096594	Metagenome	104	Y
F098316	Metagenome	104	Y
F102405	Metagenome / Metatranscriptome	101	Y
F102488	Metagenome	101	N
F104424	Metagenome	100	Y
F104467	Metagenome	100	Y
F104468	Metagenome	100	Y
F105883	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0052244_1000094	All Organisms → Viruses → Predicted Viral	2789	Open in IMG/M
Ga0052244_1000542	Not Available	1886	Open in IMG/M
Ga0052244_1000973	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1594	Open in IMG/M
Ga0052244_1002020	Not Available	1265	Open in IMG/M
Ga0052244_1002421	All Organisms → Viruses → Predicted Viral	1154	Open in IMG/M
Ga0052244_1002609	Not Available	1102	Open in IMG/M
Ga0052244_1002797	Not Available	1048	Open in IMG/M
Ga0052244_1003223	Not Available	922	Open in IMG/M
Ga0052244_1003311	Not Available	902	Open in IMG/M
Ga0052244_1003563	Not Available	868	Open in IMG/M
Ga0052244_1003756	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
Ga0052244_1004039	Not Available	818	Open in IMG/M
Ga0052244_1005543	Not Available	1482	Open in IMG/M
Ga0052244_1005909	Not Available	1414	Open in IMG/M
Ga0052244_1006809	Not Available	1286	Open in IMG/M
Ga0052244_1006834	Not Available	1283	Open in IMG/M
Ga0052244_1006863	Not Available	1281	Open in IMG/M
Ga0052244_1006977	Not Available	1267	Open in IMG/M
Ga0052244_1007121	Not Available	1250	Open in IMG/M
Ga0052244_1007153	Not Available	1247	Open in IMG/M
Ga0052244_1007775	Not Available	1175	Open in IMG/M
Ga0052244_1008058	Not Available	1145	Open in IMG/M
Ga0052244_1009791	Not Available	969	Open in IMG/M
Ga0052244_1010173	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
Ga0052244_1011316	Not Available	824	Open in IMG/M
Ga0052244_1011339	Not Available	822	Open in IMG/M
Ga0052244_1011703	Not Available	790	Open in IMG/M
Ga0052244_1012242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_56_8b	739	Open in IMG/M
Ga0052244_1012326	Not Available	731	Open in IMG/M
Ga0052244_1013264	Not Available	628	Open in IMG/M
Ga0052244_1017057	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
Ga0052244_1017334	Not Available	896	Open in IMG/M
Ga0052244_1017597	Not Available	891	Open in IMG/M
Ga0052244_1017939	Not Available	886	Open in IMG/M
Ga0052244_1018179	Not Available	883	Open in IMG/M
Ga0052244_1019837	Not Available	864	Open in IMG/M
Ga0052244_1021533	Not Available	848	Open in IMG/M
Ga0052244_1021769	Not Available	847	Open in IMG/M
Ga0052244_1023465	Not Available	835	Open in IMG/M
Ga0052244_1025769	Not Available	820	Open in IMG/M
Ga0052244_1027234	Not Available	811	Open in IMG/M
Ga0052244_1028448	Not Available	805	Open in IMG/M
Ga0052244_1028796	Not Available	803	Open in IMG/M
Ga0052244_1029148	Not Available	801	Open in IMG/M
Ga0052244_1030814	Not Available	793	Open in IMG/M
Ga0052244_1031524	Not Available	789	Open in IMG/M
Ga0052244_1031744	Not Available	788	Open in IMG/M
Ga0052244_1031866	Not Available	787	Open in IMG/M
Ga0052244_1033220	Not Available	779	Open in IMG/M
Ga0052244_1033465	Not Available	777	Open in IMG/M
Ga0052244_1034094	Not Available	773	Open in IMG/M
Ga0052244_1038017	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
Ga0052244_1038646	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
Ga0052244_1041399	Not Available	669	Open in IMG/M
Ga0052244_1043171	Not Available	587	Open in IMG/M
Ga0052244_1044282	Not Available	523	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052244_1000094	Ga0052244_10000942	F088228	VTVTESSLNELELLSNKSLVAEALQLFINTYIELSRRREVTKDFLRDLCSFSVEAQVWYILWESGGSQRFTDILLLVGCSRSKLSDVLRELLRVGLVRMVEKRYQAVSPAWLVCIREPNKQKP*
Ga0052244_1000542	Ga0052244_10005423	F104467	MNCVTNILDFYNRKSKDLEDDLSGFNKGTLSKLLIKIMKNFNKDKNNDLELQNCLILLVNLFSNNESPDFYNKKGIDASDLLNCDRETFSDVLKLEFLNN*
Ga0052244_1000973	Ga0052244_10009731	F080857	MSGDERGGETFLAKVYKGWRVTIYEPVREYLDLEIGDTLRVTVQKDEGSTHSRP*
Ga0052244_1002020	Ga0052244_10020202	F105883	MKVQKIVSLDEKTMRISQKMENFSQWVRIGLRNYELQEDMASETMRRIRWAKVAHLLAAAIVEHSIELDAEYKGTIDDLVGKAMVEARSQSSLEEFE*
Ga0052244_1002421	Ga0052244_10024211	F091295	MTNRSEYKEALGRLDKDTRVCIKYIERLINDKFNAAISTQQSPPRVNLSKIESTLDSLQKQIDGLRPKVDAAHSFVQVHDEQEKYLKKLTKNAEEVLDGVKQHFEELYDSGYYREGQRRKIREEGLI*
Ga0052244_1002609	Ga0052244_10026092	F104467	MDCINNILDFYNNKSKDEEIDLSHFNKVWLSNLLIKIMKNFNEGRTNDLELQNCLILLVNLFSNDDSPDFYNKKGKNVRELLDDDRSNYINILKSEFRNN*
Ga0052244_1002797	Ga0052244_10027971	F102488	MILEKLEKSPEIAITIIATEEVFKTYELICLDKLKEIGRSTARDWSFAMGYNHRSSLAKIIRRIKERYPEKLKIYENIYPRLYEAM*
Ga0052244_1003223	Ga0052244_10032231	F086576	MMEPKYPEDFKDWKTLYLMLDKRYLVIESPDGAMEACIHLEDNEVVGIKDKATGKDIYDGNISLAKKIFKR*
Ga0052244_1003311	Ga0052244_10033112	F104424	LNEEENQFLEFLHYQINQKNKFENVVRKVPMFKSMIQEGHKTILKMIDKFENIRRRETYDMLVHEFNNMNQKN*
Ga0052244_1003563	Ga0052244_10035631	F050887	MNMSDSTPEYLKFFGEIKFAEEKSLSAIDFESSLKSYFSKEKRLPQGRYKFAELNNSSIKDFEDSFYSYFE*
Ga0052244_1003756	Ga0052244_10037563	F089412	DATMAVSFTRAAEESYSGNLAYTALIATNNFFVAVLGNGNTSPKSVNGRLWGYRAKADATTYAALVQSEVLSA*
Ga0052244_1004039	Ga0052244_10040392	F041583	MADKMYLVIVLRKEVPDRDTGKAIYDLVKERMADKPDVQVNGHVSNHFDLDEQ*
Ga0052244_1005543	Ga0052244_10055431	F102488	MMLEKLDKSLEVAIIATEEVFKTYELICLDKLKEMGRSTARDWSFAMGYTHRSSLAKIIKRIKERYPDKLKIFDNRFPRVYEAL*
Ga0052244_1005909	Ga0052244_10059092	F088228	MAESGFNKLQLLSQEDLIVETLRRLLKSYAELNRREEVTKTFLKSLCALGVESWIWFILWEGGGAQRFTDILHVANCSRSKLSNVLQELLRVGLVRMVGVRYQAISPAWLVRG*
Ga0052244_1006809	Ga0052244_10068094	F075650	ENWVKLPVGKTVCMRFREYRVASREITDPFWKTPRTVESLLFLVSHVDGVPVDKSFSVVSEKLALEFKPYLDDGSYRGYEWCLVKDGEGFTAPRIASRRRV*
Ga0052244_1006834	Ga0052244_10068341	F082134	MPDYDVKIKFHIFPYRKFNISARDEEEARRIANEQAQHLIDTLDFTIYSIKVKKYLMDRFL*
Ga0052244_1006863	Ga0052244_10068633	F083668	MKWSPDKITALILIIGCLGLLFTGIDSEVKSILTIAAGYLFGTAIAEKKK*
Ga0052244_1006977	Ga0052244_10069772	F088254	MNEKILKEILQELKAIHFHLDELSIFYKFVNRVEMKKEEVKKEIVEDKK*
Ga0052244_1007121	Ga0052244_10071214	F069687	MEELAKKIEQILNQFIQEEMGNRLSQFAMIALKEMVINEIRNYKPGNIKDEVKK*
Ga0052244_1007153	Ga0052244_10071532	F096594	MAYIVVTGSFPAHVGMEVGKTFLKLEKLPDYIKTEHVFNSAAGDYIFFTIYKIEDDSKYFDAIKAITKRFSGYMNIKGYKYTAHPVLEAKDSLSMVGLG*
Ga0052244_1007775	Ga0052244_10077753	F089742	MAYEKFIPERGGRGSMFSTPYVTINKGGISFNRYVKEMIGEKFKYIAFYFDKESKKIGLWFWKNACPGSYSLLWFKNRETFSVNSKAFLRAYDIQEIIKKCNARHFPLERDEDNKQDKDFYCI
Ga0052244_1008058	Ga0052244_10080581	F091295	VTNRSEYKENLSRLDKDIRRCLLYLEGLIEERFQLVLNAKQPPAPKVDFSKFESKVDSLQKQIDGLRPKVDAAYSLVQEHDEHEKYLKNLTKKAEELFDGLKQHFEELYNSGYYSKVKRRKILDEGLRLHKRES*
Ga0052244_1009791	Ga0052244_10097912	F080857	LEKENEETFLAKIATGWRITIYEPVRESLGLEIGDLLRVTIRKDEAKR*
Ga0052244_1010173	Ga0052244_10101733	F089742	GRGSMFLTPYVTINKGGMSFNRYVKEMIGDKFKYVAFYFDKETKKIGLWFWKDSCPGSYALIWFKNRETFTVNSKAFFLAYDIQEIIKKCKARHFPFERDEDNKQDKDFYCIQLKPPKGRSTIR*
Ga0052244_1011316	Ga0052244_10113161	F050887	MSDTLPEYLKYFGEIKFAEEKSMSASDFERSLNKHFSIKTEKIPRGRYKFAEINNPSTDDFEESFNNYFE*
Ga0052244_1011339	Ga0052244_10113391	F022812	QAMSKLAFRAQTVDIAYLPLRQDFLAKNVLMTAQRDFRLGNSPSTLKKR*
Ga0052244_1011703	Ga0052244_10117032	F075650	VALENWVKLPVGKVVCMRFKEYRVTPREITDPFWKTPRTVESLLFLVSHVDGKPVDKTFSVVSEKLALEFKPYLEDGSYRGYEWCLVKDAPGFVAPRIAKRTRI*
Ga0052244_1012242	Ga0052244_10122422	F020845	MNKTKQTEQKEIGRIKLGDTQDLVVSIVDDEKVDLRIFLNTDSYKGPTKRGVRFYLFDDNWTEFKKLIEKVDKVYEELA*
Ga0052244_1012326	Ga0052244_10123263	F086576	DFKDWKTLYLMHDKLYLVIESPDGAMEACIHLEDNDVVGIKDKATGEDIYDGNLRLAKKILKR*
Ga0052244_1013264	Ga0052244_10132642	F089904	MTVEVSEEVKKEIFKLIATPGIEIDDIVKKTKLDSETILNILSEEYLRCNLDHGKSLCCR
Ga0052244_1014009	Ga0052244_10140091	F037999	KFNEMPMAERVKLIMKDPAELIDYVRKESHVVWKAVEAFIRRENNEGRDALIEGVAVLLELMSQLEDIPHRVVFIGNQGENHKENIKKSAEENEHDWMRGVSDQYIGAFAMFVKRMSAYIEQEAKKYGFEYIEMDKELFGDVTEEVMKSLGLSAR*
Ga0052244_1017057	Ga0052244_10170571	F016493	MGWFGDKIEKLRRMPNPYLFMHVTGKFLFGVGLGILLAIWLPIWTGWLFIIAALLIAIPSARIILGSKAK*
Ga0052244_1017334	Ga0052244_10173342	F102405	MAQEVNLLDPLGIAKAVRGQVNQMAISAKLPPLPEMPAIKVSMAGLPLLNQFNQIPDRAGMGRGERAG*
Ga0052244_1017597	Ga0052244_10175972	F056273	MSWRAKVKEFGGGDITFLSSDGETIMFIVVDEPVLLHGKFKGKEQDRIGCPVVTDEGFVLFITGKRVARKLSKFEERFIDTAFMITRHGVEGDINASYDVGILSLPEKTEQLFDIAKKEYKPAMLKAAIEDAKEAMKN*
Ga0052244_1017939	Ga0052244_10179392	F050157	IKPGPIDDKFKSDLLKTYENFIEIQAEVVPFGGKMIKRMAKYSLKFVDRYLDLIGAIPLIFHSCSKCDSVISSQTIVDLMSSGGSSSS*
Ga0052244_1018179	Ga0052244_10181791	F041583	DKMYLIITLRKEVADRDEARAIYDLVKQKMTDRPDVTISGHCSNHFDMEEPT*
Ga0052244_1019837	Ga0052244_10198371	F059633	MDSKKEKDPFDIHDRRKIRIKEFLVFKELDDDQDNYIIKEFEKTKEQTLEALEFIQKIIKNHPDMNTERIKGYLTRQRFFMKLFLKEVNREFSE*
Ga0052244_1021533	Ga0052244_10215332	F078009	MPREKIFLTPEQTARLKGLADDIEWLREEIRRAEYVGIDVTELKARFEKTNTIRERMLEEYTR*
Ga0052244_1021769	Ga0052244_10217691	F020845	MNKTKQTEQKEIGRIRLSDTQDLVASLVDNEKLDLRIFVKSDSYTGATKRGVRFYMFDDNWDEFKKLID
Ga0052244_1023465	Ga0052244_10234653	F020845	MRKVRQTEQKEIGRIKLNDTQDLVVSIVDSEKLDLRVWKDTDRYKGWTKRGIRLYLFGDN*PEFKKLVDKVD
Ga0052244_1025769	Ga0052244_10257691	F087951	KLSLKIEQLTSEISKMKEKLDKTNKFNRSFGLEAIRNSKPLEFAKEIHGLKSPTKRYILSIRTVSELWKGRKNDFLIAIRQQEKQTQKDIKALGIRIPIDDMKNLTTLAREVLSMLYISSELKGIEITEILREIISQINKEGQSMVREVKQNMLL*
Ga0052244_1027234	Ga0052244_10272342	F069658	MTEEISEEVKNEIFKLVSTPGVEIDDIPDRVNKVYKTELNYEEIMKILSDEYLKYNLDYGRRLCCRF*
Ga0052244_1028448	Ga0052244_10284481	F080857	MSGNERGGETFLAKVYKGWRITVYEPVREYLDLEIGDTLRVTVQKDERRARP*
Ga0052244_1028796	Ga0052244_10287961	F031354	MKTTFDINDILYPMLNTALVLGKLDGGRIYRNKKPLNSELQDIVIIPLSNYVGDEIINDATFMVNCYCKNFNNGTPDIAKLRATIDEVADVIEKYKNASNYYVFDITNQILLNDIDQKSMSYINLRIKCYIEK*
Ga0052244_1029148	Ga0052244_10291481	F076658	MWYRYYLTVPRGTEKTASVRKEIGLPEGVVTKVRVRFPPGPRGQVFTAVFQGTHKMWPRGEGNYAWGDDEPIEMSEHVRNITGWHYFLEGYAPLTSYDHTIWWDFNILEKEYAETWGPIQRLVELLEEFFGW*
Ga0052244_1030814	Ga0052244_10308142	F089412	LSNSNTIAVAQEAIRSDAPTNGVSFIRNASESYAGNNLDYISIIATNNFFVSCLGSGNLGAKGVDGRMWGYRARADASTYAALVQSEVLSA*
Ga0052244_1031524	Ga0052244_10315242	F075650	MALENWVKLPIGKTVCMHFREYRVTPRQITDPMFNVPRTVQSLVFLVDRVDGEPVDKTFSVVSEKLAQEFEPYLEDGSYRNYTWCLVKDAAGFVAPRVAKRSRV*
Ga0052244_1031744	Ga0052244_10317442	F059653	MTNKEALQSQTEYSNDNLLEKLLLDRGIEAEETYATANAKDIDLCAANLYFILAAHPEYREGSYSIKYNSAQLIAMAKTILKKYDMDESTVTGEAIW*
Ga0052244_1031866	Ga0052244_10318661	F046170	MIRIQDFGEIGYGGAVTLTEWWDNKRIDQGKIGPKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDVPRFAYNLTKALGAGSKRGMGSESRAVQEAQRILNEKLRAKALTEGSGT
Ga0052244_1033220	Ga0052244_10332201	F058676	VKERIIRLELTDLEDILKEKGSIKEEESLNDAHIEPGELVLRVLYEDEKAT*
Ga0052244_1033465	Ga0052244_10334651	F104468	VSLINNTARYRDGRRFPFHLLVSPINGTAMTALNESDLWHVHNYLMPQLVLIKKQQKVIAQFHSLPRLGNWRALMNFADHCYTIKQPGQEKEYNLKGLPNIIDPDEYRPIRRGPPLKIAFAPSTQAPVGHPASKGYREVKAILNSVAEKRDVEIVWIEGRPYEANLRLKQQSHILIDDVVTGNWHRTSLEGACFGCAVLNKVMKTPFVYASIDTLEERILWLVDNPAVLSDFQERARLWVLQNWHAMDSIKEYIKAYE
Ga0052244_1034094	Ga0052244_10340942	F076658	MWYRYALLVETDDTRTVPARKEIELPEGVVTGVRVRFPPGSRGQVYTAVFQGTHKMWPRGEGNYAWGDNESIDMDEHVRNITGWHYFLEGYAVNCRYDHTVWWDFNVLEKEYAETWGPIQKLVKLLEDLIGV*
Ga0052244_1038017	Ga0052244_10380172	F091295	MTNRHEYKEALGRLDKDTRVCIKYLERLINDKFNAALGAQQPPPRVNLSKIESTLDSLQKQIDGLRPKVDAAHSFVQLHDEQEKYLKKLTKNAEEVLDGVKHHFEELYDSGYYSEGTRRKIRDKGLI*
Ga0052244_1038646	Ga0052244_10386462	F074420	MFLRLIIYYLFNRKKGVYMKTFIVIMATVILGILIWGLILGSGENSLISQATRILDYGISQLQTIP*
Ga0052244_1041399	Ga0052244_10413991	F098316	MRGAFRGGLSASRFIADMKAVGLSYRRTDMLADWRSVSGLEAKKDALKYVRKDRYPTEKVMASVTWALSKEYMYVVKVKSRLTPDVPVTERNVNIISDVPMTPAMIEAEVTERWGEWEKYAAEELVGLQVWTAVRKVME*
Ga0052244_1043171	Ga0052244_10431712	F070873	MAWGGSLNKKGSDHLRNLREADKVIKFLEKFKEDLSVTEKKLFSNVIEIIVDHFTKSS*
Ga0052244_1044282	Ga0052244_10442821	F020845	MNKTKQTEQKEIGRVKLSDTQELVASIVDNEKVDLRIFVKTDSYTGATKRGVRFYLFDNNWTEFK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003144: Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences