Metagenome / Metatranscriptome Family F102405

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102405
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	67 residues
Representative Sequence	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQLPDVPTIKVGMAGLPLLNQFNKIPDRPGMSRGERAG
Number of Associated Samples	22
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.11 %
% of genes near scaffold ends (potentially truncated)	19.80 %
% of genes from short scaffolds (< 2000 bps)	76.24 %
Associated GOLD sequencing projects	18
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (94.059 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface (56.436 % of family members)
Environment Ontology (ENVO)	Unclassified (62.376 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (63.366 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.75% β-sheet: 0.00% Coil/Unstructured: 81.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02899	Phage_int_SAM_1	4.95
PF02915	Rubrerythrin	4.95
PF10983	DUF2793	3.96
PF13495	Phage_int_SAM_4	0.99
PF00196	GerE	0.99
PF13292	DXP_synthase_N	0.99
PF02735	Ku	0.99
PF01726	LexA_DNA_bind	0.99
PF00589	Phage_integrase	0.99
PF01844	HNH	0.99
PF00288	GHMP_kinases_N	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	4.95
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	4.95
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
All Organisms	root	All Organisms	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
cellular organisms	root	All Organisms → cellular organisms	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.97 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.97 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	2.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.99 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	2.97 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.99 %
Chloroflexi bacterium RBG_16_48_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_48_7	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Candidatus Nealsonbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nealsonbacteria	2.97 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.99 %
Chloroflexi bacterium RBG_16_48_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_48_7	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Candidatus Nealsonbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nealsonbacteria → Candidatus Nealsonbacteria bacterium	1.98 %
Candidatus Nealsonbacteria bacterium RIFCSPLOWO2_01_FULL_43_32	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nealsonbacteria → Candidatus Nealsonbacteria bacterium RIFCSPLOWO2_01_FULL_43_32	0.99 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.99 %
Chloroflexi bacterium RBG_16_48_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_48_7	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003141\|Ga0052246_1031890	Not Available	732	Open in IMG/M
3300003141\|Ga0052246_1033054	Not Available	718	Open in IMG/M
3300003144\|Ga0052244_1017334	Not Available	896	Open in IMG/M
3300005253\|Ga0073583_1188473	Not Available	12548	Open in IMG/M
3300005253\|Ga0073583_1318860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1565	Open in IMG/M
3300005935\|Ga0075125_10153803	Not Available	966	Open in IMG/M
3300009149\|Ga0114918_10113846	Not Available	1660	Open in IMG/M
3300009149\|Ga0114918_10161806	Not Available	1327	Open in IMG/M
3300009149\|Ga0114918_10285286	Not Available	927	Open in IMG/M
3300009149\|Ga0114918_10412162	Not Available	735	Open in IMG/M
3300009488\|Ga0114925_10002516	Not Available	9322	Open in IMG/M
3300009488\|Ga0114925_10013434	Not Available	4568	Open in IMG/M
3300009488\|Ga0114925_10023596	Not Available	3536	Open in IMG/M
3300009488\|Ga0114925_10068752	Not Available	2176	Open in IMG/M
3300009488\|Ga0114925_10084258	Not Available	1982	Open in IMG/M
3300009488\|Ga0114925_10106584	Not Available	1778	Open in IMG/M
3300009488\|Ga0114925_10126285	Not Available	1644	Open in IMG/M
3300009488\|Ga0114925_10194307	Not Available	1342	Open in IMG/M
3300009488\|Ga0114925_10219999	Not Available	1266	Open in IMG/M
3300009488\|Ga0114925_10334537	Not Available	1034	Open in IMG/M
3300009488\|Ga0114925_10392946	Not Available	957	Open in IMG/M
3300009488\|Ga0114925_10419537	Not Available	927	Open in IMG/M
3300009488\|Ga0114925_10440961	Not Available	905	Open in IMG/M
3300009488\|Ga0114925_10543590	Not Available	817	Open in IMG/M
3300009488\|Ga0114925_10559442	Not Available	806	Open in IMG/M
3300009488\|Ga0114925_10588254	Not Available	787	Open in IMG/M
3300009488\|Ga0114925_10654279	Not Available	747	Open in IMG/M
3300009488\|Ga0114925_10662781	Not Available	743	Open in IMG/M
3300009488\|Ga0114925_10743100	Not Available	702	Open in IMG/M
3300009488\|Ga0114925_10921582	Not Available	633	Open in IMG/M
3300009488\|Ga0114925_10952278	Not Available	623	Open in IMG/M
3300009488\|Ga0114925_10971345	Not Available	617	Open in IMG/M
3300009488\|Ga0114925_11073005	Not Available	588	Open in IMG/M
3300009488\|Ga0114925_11110506	Not Available	578	Open in IMG/M
3300009488\|Ga0114925_11261390	Not Available	544	Open in IMG/M
3300009488\|Ga0114925_11308226	Not Available	535	Open in IMG/M
3300009529\|Ga0114919_10010785	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nealsonbacteria → Candidatus Nealsonbacteria bacterium	7148	Open in IMG/M
3300009529\|Ga0114919_10026599	Not Available	4371	Open in IMG/M
3300009529\|Ga0114919_10226702	Not Available	1326	Open in IMG/M
3300009529\|Ga0114919_10531163	Not Available	810	Open in IMG/M
3300010243\|Ga0136485_1016901	Not Available	548	Open in IMG/M
3300014656\|Ga0180007_10028759	Not Available	4275	Open in IMG/M
3300014656\|Ga0180007_10078938	Not Available	2249	Open in IMG/M
3300014656\|Ga0180007_10219632	Not Available	1201	Open in IMG/M
3300014656\|Ga0180007_10914522	Not Available	515	Open in IMG/M
3300024262\|Ga0210003_1002812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	14471	Open in IMG/M
3300024262\|Ga0210003_1031285	Not Available	2973	Open in IMG/M
3300024262\|Ga0210003_1054314	Not Available	2021	Open in IMG/M
3300024262\|Ga0210003_1370846	Not Available	527	Open in IMG/M
3300024432\|Ga0209977_10000006	Not Available	76921	Open in IMG/M
3300024432\|Ga0209977_10008324	Not Available	4841	Open in IMG/M
3300024432\|Ga0209977_10024648	Not Available	2880	Open in IMG/M
3300024432\|Ga0209977_10038515	Not Available	2313	Open in IMG/M
3300024432\|Ga0209977_10038888	Not Available	2301	Open in IMG/M
3300024432\|Ga0209977_10043583	Not Available	2175	Open in IMG/M
3300024432\|Ga0209977_10062616	Not Available	1812	Open in IMG/M
3300024432\|Ga0209977_10082672	Not Available	1571	Open in IMG/M
3300024432\|Ga0209977_10122525	Not Available	1275	Open in IMG/M
3300024432\|Ga0209977_10194492	Not Available	990	Open in IMG/M
3300024432\|Ga0209977_10240570	Not Available	878	Open in IMG/M
3300024432\|Ga0209977_10300680	Not Available	772	Open in IMG/M
3300024432\|Ga0209977_10409547	Not Available	641	Open in IMG/M
3300024432\|Ga0209977_10438230	Not Available	615	Open in IMG/M
3300024432\|Ga0209977_10440059	Not Available	614	Open in IMG/M
3300024432\|Ga0209977_10455108	Not Available	601	Open in IMG/M
3300024432\|Ga0209977_10493562	Not Available	571	Open in IMG/M
3300024433\|Ga0209986_10072764	Not Available	1943	Open in IMG/M
3300024433\|Ga0209986_10157473	Not Available	1169	Open in IMG/M
3300025736\|Ga0207997_1065484	Not Available	1280	Open in IMG/M
3300028620\|Ga0257139_1018469	Not Available	1269	Open in IMG/M
3300031227\|Ga0307928_10493902	Not Available	548	Open in IMG/M
3300031280\|Ga0307428_1000652	Not Available	20505	Open in IMG/M
3300031539\|Ga0307380_10033899	Not Available	5849	Open in IMG/M
3300031539\|Ga0307380_10165623	Not Available	2177	Open in IMG/M
3300031539\|Ga0307380_10220295	Not Available	1817	Open in IMG/M
3300031539\|Ga0307380_10232942	Not Available	1753	Open in IMG/M
3300031539\|Ga0307380_10319866	Not Available	1430	Open in IMG/M
3300031539\|Ga0307380_10459280	Not Available	1131	Open in IMG/M
3300031539\|Ga0307380_10482395	Not Available	1095	Open in IMG/M
3300031539\|Ga0307380_10500241	Not Available	1069	Open in IMG/M
3300031539\|Ga0307380_10619078	Not Available	928	Open in IMG/M
3300031539\|Ga0307380_10960882	Not Available	686	Open in IMG/M
3300031539\|Ga0307380_11113881	Not Available	620	Open in IMG/M
3300031539\|Ga0307380_11170164	Not Available	599	Open in IMG/M
3300031565\|Ga0307379_10098309	Not Available	3183	Open in IMG/M
3300031565\|Ga0307379_10295044	Not Available	1602	Open in IMG/M
3300031565\|Ga0307379_10452520	Not Available	1215	Open in IMG/M
3300031565\|Ga0307379_10667585	Not Available	939	Open in IMG/M
3300031565\|Ga0307379_11191534	Not Available	632	Open in IMG/M
3300031566\|Ga0307378_10528123	Not Available	1052	Open in IMG/M
3300031566\|Ga0307378_10855923	Not Available	758	Open in IMG/M
3300031566\|Ga0307378_11187093	Not Available	605	Open in IMG/M
3300031578\|Ga0307376_10017779	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nealsonbacteria → Candidatus Nealsonbacteria bacterium	5666	Open in IMG/M
3300031578\|Ga0307376_10087306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_48_7	2208	Open in IMG/M
3300031578\|Ga0307376_10164480	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nealsonbacteria → Candidatus Nealsonbacteria bacterium RIFCSPLOWO2_01_FULL_43_32	1529	Open in IMG/M
3300031578\|Ga0307376_10358603	Not Available	965	Open in IMG/M
3300031578\|Ga0307376_10472182	Not Available	815	Open in IMG/M
3300031578\|Ga0307376_10635494	Not Available	676	Open in IMG/M
3300031669\|Ga0307375_10308658	Not Available	1012	Open in IMG/M
3300031669\|Ga0307375_10433339	Not Available	807	Open in IMG/M
3300031673\|Ga0307377_10437150	Not Available	965	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	71.29%
Terrestrial	Environmental → Terrestrial	28.71%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	63.37%
Soil	Environmental → Terrestrial → Soil	28.71%
Freshwater	Environmental → Aquatic → Freshwater	3.96%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.97%
Sediment	Environmental → Aquatic → Sediment	0.99%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	59.41%
Clay	Environmental → Terrestrial → Soil → Clay	28.71%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.96%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.97%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.97%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	58.42%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	28.71%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.99%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	56.44%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	28.71%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	3.96%
Marine Sediment	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment	2.97%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	1.98%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	1.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.99%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.99%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.99%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003141	Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf	Environmental	Open in IMG/M
3300003144	Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf	Environmental	Open in IMG/M
3300005253	Marine sediment microbial community near Loki's castle	Environmental	Open in IMG/M
3300005935	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300010243	Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea	Environmental	Open in IMG/M
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024432	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)	Environmental	Open in IMG/M
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental	Open in IMG/M
3300025736	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)	Environmental	Open in IMG/M
3300028620	Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031227	Saline water microbial communities from Ace Lake, Antarctica - #232	Environmental	Open in IMG/M
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0052246_10318901	3300003141	Marine Sediment	EGESMAQEVNLLDPLGIAKAVRGQVNQMATQAKLPQLPELPTIKVSMAGLPLLNQFNQIPDRPGISRGDRAG*
Ga0052246_10330542	3300003141	Marine Sediment	MAQEVNLLDPLGIAKAVRGQVNQMATQAKLPQLPELPTIKVSMAGLPLLNQFNQIPDRPGISRGDRAG*
Ga0052244_10173342	3300003144	Marine Sediment	MAQEVNLLDPLGIAKAVRGQVNQMAISAKLPPLPEMPAIKVSMAGLPLLNQFNQIPDRAGMGRGERAG*
Ga0073583_11884735	3300005253	Marine Sediment	MAQEVNLLDPLGIAKAVRGQVNQMVIQAKLPPLPEMPAIKVNMAGFPLLNQFNPVLNRPGLSRSDRAG*
Ga0073583_13188601	3300005253	Marine Sediment	MAQQVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPAISVNMAGLPLLNQFNQIPNRPGFG
Ga0075125_101538032	3300005935	Saline Lake	MAQEINLLDPLGVVKMARGQINSMCIAANLPQVPDVPVIKMAMPSLPLLNKWTPITERPGMSRGERAG*
Ga0114918_101138462	3300009149	Deep Subsurface	MAQEINLLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPTLPLLNKWNPIAERPGMSRGERAG*
Ga0114918_101618061	3300009149	Deep Subsurface	DPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPSLPLLNKWNQIPDRPGMSRGERAG
Ga0114918_102852863	3300009149	Deep Subsurface	MAQEVNLLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPTLPLLNKWNPIPERPGMSRGERAG*
Ga0114918_104121623	3300009149	Deep Subsurface	VKMARGQINSMFVAAKLPTLPDVPIIKMGMPSLPLLNKWNPIPERPGMSRGERAG*
Ga0114925_1000251610	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQARLPQVPEVPTITVSMAGLPLLNRFNQITDRPGMSRGDRAG*
Ga0114925_100134342	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPTIKVGMDGLPLLNQFNQIPDRPGLSRPERAG*
Ga0114925_100235963	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQLPEVPTIQVSMAGLPLLNRFIQTPDRAGMGRGDRAG*
Ga0114925_100687523	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAISAKLPPLPEMPTINVGMAGLPLLNQFNQTADRPGMSRGDRAG*
Ga0114925_100842584	3300009488	Deep Subsurface	MAQEVNLLDPLGIVKAVRGQVNQMAIQAKLPQLPDVPTIKVGMAGLPLLNQFNKIPDRPGMARTDRAG*
Ga0114925_101065842	3300009488	Deep Subsurface	MPNEVNLLDPLGIANAVRGQVNQMAAQAKLPQLPILPTVSVKGLPFPNRIPDRPGMSRPDRAG*
Ga0114925_101262852	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQLPDVPTIKVGMAGLPLLNQFNKIPDRPGMSRGERAG*
Ga0114925_101943072	3300009488	Deep Subsurface	MSQEVNILDPLGIAKAVRGQVNQMAIQAKLPQLPDVPAIKVTMAGLPLLNRFNQIPDRAGWGRGERAG*
Ga0114925_102199992	3300009488	Deep Subsurface	MAQEVNLFDPLGIAKAVRGQVNQMAISAKLPPLPDLPAIKVDMAGLPLLNRFSQIPDRPGMGRGERAG*
Ga0114925_103345372	3300009488	Deep Subsurface	MAQQVNLLDPLGIAKMVRGQVNQMAISAKLPPLPEMPALSVDMAGLPLLNQFNQTADRPGMSRGDRAG*
Ga0114925_103929461	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAVTAKLPPLPEMPVINVAMAGLPLLNQFNPVSARPGYER
Ga0114925_104195372	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQLPDVPAIKVGMAGLPFLNQFNQASNRPGYERSDRAG*
Ga0114925_104409613	3300009488	Deep Subsurface	MAQEVNLFDPLGIAKAVRGQVNQMAISAKLPPLPDLPAIKVNMAGLPLLNRFSQIPDRAGMGRGERAG*
Ga0114925_105435902	3300009488	Deep Subsurface	MPQEVNLLDPLGIAKAVRGQVNSMAIQAKLPQLPSVPTVNIPMDGLPFLNRFNPIANRPGFGRGERAG*
Ga0114925_105594422	3300009488	Deep Subsurface	MAKEVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPAIKVTTDGIPLLNQFNPVADRPGYERGDRAG*
Ga0114925_105882542	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAVQAKLPPLPEMPAINVNMAGLPLLNTFNMIPNRPGLSRGDRAG*
Ga0114925_106542791	3300009488	Deep Subsurface	MAQEVNILDPLGIAKAVRGQVNQMATQAKLPPLPEMPTINVGMAGLPLLNQFNLMPNRPGMGRGDRAG*
Ga0114925_106627812	3300009488	Deep Subsurface	VLLKKERRKRLMAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPTIKVSMAGLPLLNRFNLIPNRPGYERADRAG*
Ga0114925_107431002	3300009488	Deep Subsurface	MAQDVNLLDPLGIAKAVRGQVNQMAIQARLPQLPQMPAINVAMDGLPLLNQFNKAPDRPGFSRGDRAG*
Ga0114925_109215822	3300009488	Deep Subsurface	MPKDVNLFDPLGIAKAVRGQINQMAISAKLPALPDLPAINVGMDGLPLLNQFNKIPDRPGMARQDRAG*
Ga0114925_109522781	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAISAKLPPLPDMPTINVGMAGLPLLNQFNQAIDRPGMSRGDRAG*
Ga0114925_109713452	3300009488	Deep Subsurface	MVQEVNILDPLGIVKAVRGQVNQMAIQAKLPQLPEVPTIKVSMAGLPLLNQFNKAPDRPGFSRGDRAG*
Ga0114925_110730052	3300009488	Deep Subsurface	MAQQVNLLDPLGIAKAVRGQVNQMASQAKLPQIPTLPAINVNMAGFPLLNTFNQVSDRPGYERSERAG*
Ga0114925_111105061	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNLMVIQSKLPPLPEMPAIKVTTDGIPL
Ga0114925_112613901	3300009488	Deep Subsurface	MPKDINLLDPLGIAKAVRGQVNQMAAQAKLPSLPNLPAIKVNVDGIPLVTRFNQVQDRPGMATPDRAG*
Ga0114925_113082262	3300009488	Deep Subsurface	MAQEVNLLDPLGIAKAARGQINQMAIQAKLPPLPEMPAVKVNMAGLPLLNRFNPVPDRPGYAGPDRAG
Ga0114919_100107856	3300009529	Deep Subsurface	MAQEVNLLDPLGIAKVVRGQVNQMAIQAKLPQLPEMPTIKMNMAGLPLLNVFNQIPERPGWSRGERAG*
Ga0114919_100265991	3300009529	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQANLPQLPNVPTINVQMDGLPLLNQFNQTPERPGWSRGERAG*
Ga0114919_102267021	3300009529	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPTIKVSMAGLPLLNQFNQIPDRPGFSRGERAG*
Ga0114919_105311631	3300009529	Deep Subsurface	RKGERIMAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQIPEVPTIKMNLAGLPLLNKWAPIPERPGMSRGERAG*
Ga0136485_10169012	3300010243	Marine Sediment	SAAFLLLYKRKEGSIMAQEVNLLDPLGIVKAVRGQVNQMAISAKLPPLPEMPTIKMSMAGLPLLNKFNQIPDRPGMSRGERAG*
Ga0180007_100287598	3300014656	Groundwater	MAQQVNLFDPLGIAKAVRGQVNQMAIQAKLPQVPEIPAINVSMAGLPLLNRFNQIPDRAGMGRTDRAG*
Ga0180007_100789386	3300014656	Groundwater	MAKEVNLLDPLGIAKVVRGQVNQMVIQANLPPLPEMPAIKVNMDGLPLVNTFNQVPDRPGMSRGERAG*
Ga0180007_102196321	3300014656	Groundwater	KGDKIMAQEINVLDPLGIVKMARGQFNSMCVAAKLPTLPEMPVITMNMAGLPLLNKWAPIPERPGMSRGERAG*
Ga0180007_109145222	3300014656	Groundwater	MAQEVNLLDPLGVVKMARGQINSMFVAAKLPTLPDVPIIKMGMPSLPLLNKWNPIPERPGMSRGERAG*
Ga0210003_100281211	3300024262	Deep Subsurface	MAQEVNLLDPLGVVKMARGQINSMFVAAKLPTLPDVPIIKMGMPSLPLLNKWNPIPERPGMSRGERAG
Ga0210003_10312856	3300024262	Deep Subsurface	MAQEVNLLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPTLPLLNKWNPIPERPGMSRGERAG
Ga0210003_10543142	3300024262	Deep Subsurface	MAQEINLLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPTLPLLNKWNPIAERPGMSRGERAG
Ga0210003_13708461	3300024262	Deep Subsurface	MAQEVNLLDPLGVVKMARGQINSMFVAAKLPTLPDVPIIKMAMPSLPLLNKWAPIPERPGMSRGERAG
Ga0209977_10000006110	3300024432	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQARLPQVPEVPTITVSMAGLPLLNRFNQITDRPGMSRGDRAG
Ga0209977_100083243	3300024432	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPTIKVGMDGLPLLNQFNQIPDRPGLSRPERAG
Ga0209977_100246484	3300024432	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAISAKLPPLPEMPTINVGMAGLPLLNQFNQTADRPGMSRGDRAG
Ga0209977_100385152	3300024432	Deep Subsurface	MAQEVNLFDPLGIAKAVRGQVNQMAISAKLPPLPELPAIKVNMAGLPLLNRFSQIPDRAGMGRGERAG
Ga0209977_100388885	3300024432	Deep Subsurface	MAQEVNLLDPLGIVKAVRGQVNQMAIQAKLPQLPDVPTIKVGMAGLPLLNQFNKIPDRPGMARTDRAG
Ga0209977_100435834	3300024432	Deep Subsurface	MAQEVNLFDPLGIAKAVRGQVNQMAISAKLPPLPDLPAIKVDMAGLPLLNRFSQIPDRPGMGRGERAG
Ga0209977_100626165	3300024432	Deep Subsurface	MPQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQLPEVPTIQVSMAGLPLLNRFIQTPDRAGMGRGDRAG
Ga0209977_100826721	3300024432	Deep Subsurface	MGQEINLLDPLGIAKVMRGQVNQMAIQAKLPPLPEMPTITVGMAGLPLLNQFNKVPNRPGYERPD
Ga0209977_101225252	3300024432	Deep Subsurface	MAQDVNLLDPLGIAKAVRGQVNQMAIQARLPQLPQMPAINVAMDGLPLLNQFNKAPDRPGFSRGDRAG
Ga0209977_101944923	3300024432	Deep Subsurface	MAKDVNLLDPLGIAKAVRGQVNQMAISAKLPALPDLPAINVGMDGLPLLNQFNQVPNRPGMARQDRAG
Ga0209977_102405704	3300024432	Deep Subsurface	RGQINQMATSAKLPALPDLPAINVGMDGLPLLNQFNQVPNRPGMARQDRAG
Ga0209977_103006801	3300024432	Deep Subsurface	MAQEVNLFDPLGIAKAVRGQVNQMAISAKLPPLPDLPAIKVDMAGLPLLNRFNQIPDRAGMG
Ga0209977_104095472	3300024432	Deep Subsurface	MPNEVNLLDPLGIANAVRGQVNQMAAQAKLPQLPILPTVSVKGLPFPNRIPDRPGMSRPDRAG
Ga0209977_104382301	3300024432	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQLPALPTINVSTAGLPLLNKFNQIPDRPGMGRGERAG
Ga0209977_104400591	3300024432	Deep Subsurface	MAKEVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPAIKVTTDGIPLLNQFNPVADRPGYERGDRAG
Ga0209977_104551082	3300024432	Deep Subsurface	MSQEVNILDPLGIAKAVRGQVNQMAIQAKLPQLPDVPAIKVTMAGLPLLNRFNQIPDRAGWGRGERAG
Ga0209977_104935622	3300024432	Deep Subsurface	MVQEVNILDPLGIVKAVRGQVNQMAIQAKLPQLPEVPTIKVSMAGLPLLNQFNKAPDRPGFSRGDRAG
Ga0209986_100727642	3300024433	Deep Subsurface	MAQEVNLLDPLGIAKVVRGQGNQMAIQAKLPQLPEMPTIKMNMAGLPLLNVFNQIPERPGWSRGERAG
Ga0209986_101574732	3300024433	Deep Subsurface	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPPLPEMPTINVSMAGLPLLNQFNQIPDRPGFSRGERAG
Ga0207997_10654843	3300025736	Saline Lake	MAQEINLLDPLGVVKMARGQINSMCIAANLPQVPDVPVIKMAMPSLPLLNKWTPITERPGMSRGERAG
Ga0257139_10184693	3300028620	Marine	MAQEINLLDPLGVAKMVRGQLNTMAIQANLPQIPEIPSIKMEMAGLPLLNKWAPIPERPGMSRGERAG
Ga0307928_104939022	3300031227	Saline Water	MAQEVNLLDPLGIAKAVRGQVNQMATQAKLPPLPEMPTINVSMAGLPLLNQFNKVPDRPGFSRGERAG
Ga0307428_100065226	3300031280	Salt Marsh	MAQEVNLLDPLGIAKAVRGQVNQMAIQAKLPQLPEMPTIKMSMAGLPLLNKFNQTPDRPGMSRGERAG
Ga0307380_1003389911	3300031539	Soil	MAQEINLLDPLGVAKMARGQINSMFVAAKLPTLPEVPIIKMNMPTLPLLNKWAPIPERPGMSRGERAG
Ga0307380_101656231	3300031539	Soil	MAQEINLLDPLGVVKMARGQLNSMCVAAKLPTLPEVPSIKMNMAGLPLLNKWAQIPERPGMSRGERAG
Ga0307380_102202951	3300031539	Soil	APCPKLLGIINIQSKGEIIMAQEVNLLDPFGVVKMARGQFNAMCVAANLPTLPEMPNIKMNMAGLPLLNKWNPIPDRPGMSRGERAG
Ga0307380_102329422	3300031539	Soil	MAQEINLLDPLGVVKMARGQINSMFVAAKLPTLPDVPIIKMGMPNLPLLNKWNPITERPGMSRGERAG
Ga0307380_103198662	3300031539	Soil	MAQEVNLLDPLGVVKMARGQFNSMCVAANLPTLPEMPVIKMGMPTLPLLNKWNPIPERPGMSRGERAG
Ga0307380_104592802	3300031539	Soil	MAQEINLLDPFGVVKMVRGQVNSMCVAAKLPQIPEVPTIKMSMAGLPLLNKWTPIADRPGMSRGERAG
Ga0307380_104823953	3300031539	Soil	MAQEVNLFDPFGIAKAVRGQVNQVAIQSRLPQLPDVPTVKVSMGGFPFLNRFDKIPNRPGMARGERAG
Ga0307380_105002412	3300031539	Soil	MAQEINLLDPLGVVKMARAQVNSMCVAARLPQVPEMPVIKMNMAGLPLLNKWAPIPERPGMSRGERAG
Ga0307380_106190781	3300031539	Soil	MAQEINLLDPLGVVKMARGQVNSMFVAAKLPTLPEVPIIKMGMPSLPLLNKWSPIPDRPGMSRGERAG
Ga0307380_109608823	3300031539	Soil	MAQEINLLDPLGVVKMARGQVNSMFVAAKLPTLPEMPVIKMNMPSLPLLNKWTPMAERPGMSRGERAG
Ga0307380_111138812	3300031539	Soil	MAQEVNLFDPLGIAKAVRGQVNQMAIQAKLPQVPEVPMVKVSMGGLPFLNQFNKIPDRPGWARGERAG
Ga0307380_111701642	3300031539	Soil	MAQEVHLLDPVGVVKMARGQINSMFVAAKLPTLPDVPIIKMAMPSLPLLNKWAPIPERPGMSRGERAG
Ga0307379_100983094	3300031565	Soil	MAQEINLLDPLGVVKMARGQVNSMCVAAKLPTLPEVPIIKMGMPSLPLLNKWSPIPDRPGMSRGERAG
Ga0307379_102950442	3300031565	Soil	MAQEVNLLDPFGVVKMARGQFNAMCVAANLPTLPEMPNIKMNMAGLPLLNKWNPIPDRPGMSRGERAG
Ga0307379_104525203	3300031565	Soil	MAQEINLLDPFGVAKMARGQLNSMCVAAKLPTLPEMPVIKMNMSGLPLLNKWNSIPDRPGMSRGERAG
Ga0307379_106675854	3300031565	Soil	MAQEVNLLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPTLPLLNKWNPIAERPGMSRGERAG
Ga0307379_111915342	3300031565	Soil	IAKAVRGQVNQMAIQAKLPQIPELPTIKMNMAGLPLLNQFNKVPNRPGYERADRAG
Ga0307378_105281234	3300031566	Soil	MAQEVNILDPLGIAKAVRGQVNQMAIQAKLPQLPEMPTIKVNMAGLPLLNQFNKLPDRPGWSR
Ga0307378_108559232	3300031566	Soil	MAQEVNLFDPLGIAKAVRGQVNQMAIQAKLPQIPEVPMVKVSMGGLPFLNQFNKIPDRPGMSRGERAG
Ga0307378_111870932	3300031566	Soil	MAQEINLLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPSLPLLNKWNPIAERPGMSRGERAG
Ga0307376_100177796	3300031578	Soil	MAQEVNLLDPLGVVKMARGQFNSMCVAAKLPTLPEMPVIKMNMAGFPLLNKWSPIPDRPGMSRGERAG
Ga0307376_100873062	3300031578	Soil	MAQEVNLLDPLGVVKMARGQLNSMCVAAKLPTLPEVPSIKMNMAGLPLLNKWAQIPERPGMSRGERAG
Ga0307376_101644803	3300031578	Soil	MAQEINLLDPFGVVKMVRGQVNSMAIQAKLPQIPEVPTIKMSMAGLPLLNKWTPIADRPGMSRGERAG
Ga0307376_103586033	3300031578	Soil	MAQEVNLLDPFGVAKMARGQINTMCVAANLPQVPDVPVIKLAMPSLPLLNKWAPIPERPGMSRGERAG
Ga0307376_104721821	3300031578	Soil	MAQEVNLLDPLGVAKMMRGQVNAMCVAAKLPTLPEMPAIKMNMTGLPLLNKWAPIP
Ga0307376_106354941	3300031578	Soil	EGDIIMAQEVNLLDPLGVVKMARGQFNSMCVAANLPTLPEMPVIKMGMPTLPLLNKWNPIPERPGMSRGERAG
Ga0307375_103086583	3300031669	Soil	MAQEINLLDPFGVVKMVRGQVNTMAIQAKLPQIPEVPTIKMSMAGLPLLNKWTPIADRPGMSRGERAG
Ga0307375_104333394	3300031669	Soil	LLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPTLPLLNKWNPIAERPGMSRGERAG
Ga0307377_104371503	3300031673	Soil	MAQEINLLDPLGVVKMARGQINSMFVAAKLPTLPEVPIIKMGMPTLPLLNKWNPIPERPGMSRGERAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102405

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences