Sample 3300010243

Overview

Basic Information
IMG/M Taxon OID	3300010243 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121458 \| Gp0154502 \| Ga0136485
Sample Name	Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea
Sequencing Status	Permanent Draft
Sequencing Center	Oregon State University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	64016930
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_46_9	1
Not Available	7
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Interfaces Within Marine Sediments From The South China Sea
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Microbial Communities From Interfaces Within Marine Sediments From The South China Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	South China Sea
Coordinates	Lat. (^o)	12.91889	Long. (^o)	115.04722	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F014684	Metagenome / Metatranscriptome	261	Y
F038003	Metagenome / Metatranscriptome	167	Y
F058676	Metagenome	134	Y
F062423	Metagenome	130	Y
F071959	Metagenome / Metatranscriptome	121	Y
F073072	Metagenome	120	Y
F080857	Metagenome / Metatranscriptome	114	Y
F092941	Metagenome / Metatranscriptome	107	N
F102404	Metagenome	101	Y
F102405	Metagenome / Metatranscriptome	101	Y

Family

Category

Number of Sequences

3D Structure?

F014684

Metagenome / Metatranscriptome

261

F038003

Metagenome / Metatranscriptome

167

F058676

Metagenome

134

F062423

Metagenome

130

F071959

Metagenome / Metatranscriptome

121

F073072

Metagenome

120

F080857

Metagenome / Metatranscriptome

114

F092941

Metagenome / Metatranscriptome

107

F102404

Metagenome

101

F102405

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0136485_1002582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_46_9	897	Open in IMG/M
Ga0136485_1002942	Not Available	865	Open in IMG/M
Ga0136485_1004624	Not Available	768	Open in IMG/M
Ga0136485_1005961	All Organisms → cellular organisms → Archaea	720	Open in IMG/M
Ga0136485_1007680	All Organisms → cellular organisms → Archaea	675	Open in IMG/M
Ga0136485_1008052	Not Available	667	Open in IMG/M
Ga0136485_1009528	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	639	Open in IMG/M
Ga0136485_1009591	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	638	Open in IMG/M
Ga0136485_1013888	Not Available	580	Open in IMG/M
Ga0136485_1015858	Not Available	558	Open in IMG/M
Ga0136485_1016901	Not Available	548	Open in IMG/M
Ga0136485_1018995	Not Available	529	Open in IMG/M
Ga0136485_1019998	All Organisms → cellular organisms → Archaea	520	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0136485_1002582

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_46_9

897

Open in IMG/M

Ga0136485_1002942

Not Available

865

Open in IMG/M

Ga0136485_1004624

Not Available

768

Open in IMG/M

Ga0136485_1005961

All Organisms → cellular organisms → Archaea

720

Open in IMG/M

Ga0136485_1007680

All Organisms → cellular organisms → Archaea

675

Open in IMG/M

Ga0136485_1008052

Not Available

667

Open in IMG/M

Ga0136485_1009528

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays

639

Open in IMG/M

Ga0136485_1009591

All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon

638

Open in IMG/M

Ga0136485_1013888

Not Available

580

Open in IMG/M

Ga0136485_1015858

Not Available

558

Open in IMG/M

Ga0136485_1016901

Not Available

548

Open in IMG/M

Ga0136485_1018995

Not Available

529

Open in IMG/M

Ga0136485_1019998

All Organisms → cellular organisms → Archaea

520

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0136485_1002582	Ga0136485_10025823	F092941	MLGEILLKMVSVLTPDDIKQMKAAGCGDEVKAILGELDKLAVSWHDGEYGLMSLVDVQIWANVRSSLDKLRAALAEG*
Ga0136485_1002942	Ga0136485_10029422	F062423	MRKIVIEELIRAGGGMIFWMAGLYGLDYIGVIAISAGQSLAISAGISTVMFLVLVVLRRRTGKEFMLKRVRYLLVLLLVFSIPVFIRRMLAGEVTRAVLFAVGVLFVCLLLFIVSKRPGMKW*
Ga0136485_1004624	Ga0136485_10046242	F073072	VGDLKKVMFIVAHLVPDPEAYEGKTNRDVENEILREMPVIPYVSRIEKVTVLDC*
Ga0136485_1005961	Ga0136485_10059613	F102404	MSRELRELLGPYELLELRDREHVVLRIVSHELGTMVIHPRWPGAPAEKEISVLSVHLAPGVKPYPPQYFDITSKTLIAQLHPFLLERGFERYEFVITKFGVPPRARFTLERRPR*
Ga0136485_1007680	Ga0136485_10076802	F102404	VSRELRELLGPYELLELRDREHAVLRMVSSELGTMVIHPRWPGAPKEKEISVLRVHLAPGVKPYPPQYYDITSKTLIAQLQPFLMERGFENYEFVVTKFGIPPRARFTLERRPR*
Ga0136485_1008052	Ga0136485_10080522	F080857	MSGNERVRETFLAKVYKGWRVTIYEPVREHLGLEVGDRVRITIRKDESKG*
Ga0136485_1009528	Ga0136485_10095281	F038003	VSPQYANSKQTDDASTLAKDLLGVTLVPETTVQSGPDAASSPPVDQEVPTDSHLVPFGLSLDPPSDFASMDALIEAGPNPLWYCMRSPWDRLTAVSTYGPLGSEEADEPDFCWDFSGLGNPSAMRDFMTACDYCLSDCSDGSRSLGDEDCGPSRECFHVDLGGPGEGNQLGTPENGDPPRPAPRVDILRELAVIPVPAGGHDPQLEQIREMQA
Ga0136485_1009591	Ga0136485_10095912	F014684	MTWHQYYFRIIGFALAGAGAGLILDELIHGPFTLTPANHEFWGLVALVAGCVLISKKPHGKILS*
Ga0136485_1013888	Ga0136485_10138881	F071959	SDKKRYRTTALAAGLERCGQKNIGNINADIPVLAGIPPADKEARVAAIKASIETGAWPRSIDQRELAPLTDFVAAAAKDFWVTIALAAVGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPLGPRLETAAFFSEPAVIDPQDLFAIQVLCNIIAGATPVHIDNFLFEI
Ga0136485_1015858	Ga0136485_10158581	F071959	AGLERCGLKSIGDINSDVPGLQAIPIGSKSARVAALQAYIEPGAWPSSIDQRELAPLTDFVAAAAQDFWGTVALAAVGTVYTCLGALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPMGTRLETVAFFSEPVVIDPQDLFAIQVLCNVIAGATPVNSDNFLVESSGGV
Ga0136485_1016901	Ga0136485_10169012	F102405	SAAFLLLYKRKEGSIMAQEVNLLDPLGIVKAVRGQVNQMAISAKLPPLPEMPTIKMSMAGLPLLNKFNQIPDRPGMSRGERAG*
Ga0136485_1018995	Ga0136485_10189952	F058676	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPSELVIRVLAEDKPSE*
Ga0136485_1019998	Ga0136485_10199982	F102404	VSRELRELLLPYALLELRDREHVILQIVSHELGTMVIHPRWPGAPAEKEISVLRVHLAAGVKPYPPQYYDITSKTLIAQLLPFLQERGFERWEFVITKFGVPPRARFTLERRPR*

Scaffold ID

Protein ID

Family

Sequence

Ga0136485_1002582

Ga0136485_10025823

F092941

MLGEILLKMVSVLTPDDIKQMKAAGCGDEVKAILGELDKLAVSWHDGEYGLMSLVDVQIWANVRSSLDKLRAALAEG*

Ga0136485_1002942

Ga0136485_10029422

F062423

MRKIVIEELIRAGGGMIFWMAGLYGLDYIGVIAISAGQSLAISAGISTVMFLVLVVLRRRTGKEFMLKRVRYLLVLLLVFSIPVFIRRMLAGEVTRAVLFAVGVLFVCLLLFIVSKRPGMKW*

Ga0136485_1004624

Ga0136485_10046242

F073072

VGDLKKVMFIVAHLVPDPEAYEGKTNRDVENEILREMPVIPYVSRIEKVTVLDC*

Ga0136485_1005961

Ga0136485_10059613

F102404

MSRELRELLGPYELLELRDREHVVLRIVSHELGTMVIHPRWPGAPAEKEISVLSVHLAPGVKPYPPQYFDITSKTLIAQLHPFLLERGFERYEFVITKFGVPPRARFTLERRPR*

Ga0136485_1007680

Ga0136485_10076802

F102404

VSRELRELLGPYELLELRDREHAVLRMVSSELGTMVIHPRWPGAPKEKEISVLRVHLAPGVKPYPPQYYDITSKTLIAQLQPFLMERGFENYEFVVTKFGIPPRARFTLERRPR*

Ga0136485_1008052

Ga0136485_10080522

F080857

MSGNERVRETFLAKVYKGWRVTIYEPVREHLGLEVGDRVRITIRKDESKG*

Ga0136485_1009528

Ga0136485_10095281

F038003

VSPQYANSKQTDDASTLAKDLLGVTLVPETTVQSGPDAASSPPVDQEVPTDSHLVPFGLSLDPPSDFASMDALIEAGPNPLWYCMRSPWDRLTAVSTYGPLGSEEADEPDFCWDFSGLGNPSAMRDFMTACDYCLSDCSDGSRSLGDEDCGPSRECFHVDLGGPGEGNQLGTPENGDPPRPAPRVDILRELAVIPVPAGGHDPQLEQIREMQA

Ga0136485_1009591

Ga0136485_10095912

F014684

MTWHQYYFRIIGFALAGAGAGLILDELIHGPFTLTPANHEFWGLVALVAGCVLISKKPHGKILS*

Ga0136485_1013888

Ga0136485_10138881

F071959

SDKKRYRTTALAAGLERCGQKNIGNINADIPVLAGIPPADKEARVAAIKASIETGAWPRSIDQRELAPLTDFVAAAAKDFWVTIALAAVGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPLGPRLETAAFFSEPAVIDPQDLFAIQVLCNIIAGATPVHIDNFLFEI

Ga0136485_1015858

Ga0136485_10158581

F071959

AGLERCGLKSIGDINSDVPGLQAIPIGSKSARVAALQAYIEPGAWPSSIDQRELAPLTDFVAAAAQDFWGTVALAAVGTVYTCLGALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPMGTRLETVAFFSEPVVIDPQDLFAIQVLCNVIAGATPVNSDNFLVESSGGV

Ga0136485_1016901

Ga0136485_10169012

F102405

SAAFLLLYKRKEGSIMAQEVNLLDPLGIVKAVRGQVNQMAISAKLPPLPEMPTIKMSMAGLPLLNKFNQIPDRPGMSRGERAG*

Ga0136485_1018995

Ga0136485_10189952

F058676

VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPSELVIRVLAEDKPSE*

Ga0136485_1019998

Ga0136485_10199982

F102404

VSRELRELLLPYALLELRDREHVILQIVSHELGTMVIHPRWPGAPAEKEISVLRVHLAAGVKPYPPQYYDITSKTLIAQLLPFLQERGFERWEFVITKFGVPPRARFTLERRPR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010243: Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences