Scaffold JGI25165J46597_1031803

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25165J46597_1031803

Scaffold JGI25165J46597_1031803

Overview

Basic Information
Taxon OID	3300003214 Open in IMG/M
Scaffold ID	JGI25165J46597_1031803 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	680
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039839	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25165J46597_10318031	F039839	AGGA	MIALTRGENFARRIIPVGSRPALRRETRFGLPLTPESGGPSRHRAAQFAPAMI

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