NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LKpool_1021750

Scaffold LKpool_1021750


Overview

Basic Information
Taxon OID3300003311 Open in IMG/M
Scaffold IDLKpool_1021750 Open in IMG/M
Source Dataset NameLooe Key pool
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)977
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Cnidaria → Cnidaria Microbial Communities From The Caribbean, With Black Band Disease

Source Dataset Sampling Location
Location NameLooe Key National Marine Sanctuary, Florida, USA
CoordinatesLat. (o)24.5484806Long. (o)-81.4059137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020846Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
LKpool_10217501F020846GGAMSVPENLHPTHNEKTFGAMKAKRMVNRATFKTSEASPGETLYVDVPKLNENEVLVPGSLALLFNIDLSGGHANNFLVQNVTRALVDKMVVKFGGAILEDTNGYDVYKTFEDLFLSQERRDGMILEGIQSEDLCKIRSGAGDKKTSGVAAENKLEEIFGKKYRIRLDHQILTDHGVFYPQALYNNLTFELTLAQASQVVKGSDPTKLKFKLTNIQLEYEMIRSKTLADEAH
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