NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilH2_10342816

Scaffold soilH2_10342816


Overview

Basic Information
Taxon OID3300003324 Open in IMG/M
Scaffold IDsoilH2_10342816 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample H2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2879
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078778Metagenome / Metatranscriptome116N
F094485Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
soilH2_103428161F078778GAGMRNALLRAMHREEGYSLVISMLLMAIMMVLLAVSLDAGSASLHQSSLSLQWSKALVVAEGGADAAVTLLGQSRAATNSCAIGTNNVCNGVDGQYQVRWQSQGNQIKVDSIGYYPDKANAQ
soilH2_103428162F094485GGTGGMAVMSIVATAMMAVAMRSFTTTNTITNRRDVLVDGRVAIDQMTKQLRQAESIDASSTESLLKFDTYIDGTATTIVWRVTGSSPPYTLEQSRDGGAHFAPLVSPLLCKTSADTGCADHPPFTQSPPGGPVDRITIDLTFLNSTSTVDLISDVQLRNVESEDS*
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