NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DC07A_1020326

Scaffold DC07A_1020326


Overview

Basic Information
Taxon OID3300003450 Open in IMG/M
Scaffold IDDC07A_1020326 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S7-DC07A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location
Location NameDouglas Channel, British Columbia, Canada
CoordinatesLat. (o)53.6667Long. (o)-129.1333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040632Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
DC07A_10203261F040632N/AMSHRTRGAANYEIELEDLRDAAALPDTVHVVVASREEELLWAVFDGFSELPTVRVTGCSTLPQTRQICAADPPGYLIIDMTLLDHEPMDLITLANLSNCETHIVALTDHPVFEIGARFGKARLTFLQKPVSAHDLLLLLRLRISEHDECEAKVC*
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