NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ZC4mRNADay78_117942

Scaffold ZC4mRNADay78_117942


Overview

Basic Information
Taxon OID3300003628 Open in IMG/M
Scaffold IDZC4mRNADay78_117942 Open in IMG/M
Source Dataset NameCompost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Sao Paulo, Virginia Bioinformatics Institute
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location
Location NameSao Paulo Zoo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026580Metagenome / Metatranscriptome197Y
F055473Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
ZC4mRNADay78_1179421F026580N/ACALPICRSEPGQVVQVGFGLERIAVTQRVSGCYCAPARAQDSGGLKKVCQTKDAERRDKVSLRTGKDTRSRQDP*
ZC4mRNADay78_1179422F055473GAGGVHQANAPSKAAADLVRNGQDAEESRRRVLVWFASRWRNHQLEQAEKPHSKASSRETLAGPATRPKTPLAVENSVG

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