NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008277_111705

Scaffold Ga0008277_111705


Overview

Basic Information
Taxon OID3300003718 Open in IMG/M
Scaffold IDGa0008277_111705 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002698Metagenome / Metatranscriptome536Y

Sequences

Protein IDFamilyRBSSequence
Ga0008277_1117051F002698N/AQIDRIDQHALTEFINRVKLIDSFIYMKIKEGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSADQRDAIFARSDSKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA*
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