NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058891_1545513

Scaffold Ga0058891_1545513


Overview

Basic Information
Taxon OID3300004104 Open in IMG/M
Scaffold IDGa0058891_1545513 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1309
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.531427Long. (o)-72.189946Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000274Metagenome / Metatranscriptome1399Y
F001527Metagenome / Metatranscriptome678Y
F052816Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0058891_15455131F000274GGAGGMRLKMVMAFCALCVFVGSAGLAAAQDTTKTTHKKARTLRGCLQKGDDANEYQLTTAKGATWEVKSDSVNLGEHVGHGVMLTGVVSHAKMHGMKEDAKSEAKEHGVDKDSTEHGHMTVTNLSMVSEACGK*
Ga0058891_15455132F001527GGAGMKMTSADLLDRHLKPLCSRDNHLMKYETGGSRLNTGYQASYHCDFEGCSVRFDATDGYYMLIGMPNHANPVDEPGVNTAKCPSHNHWLYRRRNADREAGVDWCCGVEGCDYRSNPNRERPASIPSRAQ*
Ga0058891_15455133F052816N/AGEVTQSFTMGLFVARVERGSHVILEQTCVGDAVWVPKRIEIRATARILFLKSLAIDRILTYSDYRLAADGPYSVSK*
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