NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066222_1096568

Scaffold Ga0066222_1096568


Overview

Basic Information
Taxon OID3300004460 Open in IMG/M
Scaffold IDGa0066222_1096568 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5146
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F023293Metagenome210Y
F052465Metagenome / Metatranscriptome142Y
F057197Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0066222_10965682F023293AGGGGGMRYGILDDEGNVVRWVWHMPPYPHIVQKIKRQRKPKLDLSNVPEALF*
Ga0066222_10965683F019099GGAGGLIINGRIIKDWDKSQISTAYQRPNQFRVITWDMGRVQSWLLGKQPLARTLLEKVIR*
Ga0066222_10965685F052465GGAMVLEMLNHEKATEGRASILRRIHQRYNVLRVSRERIELLQQAKQP*
Ga0066222_10965686F057197AGGMTDFGAWRYENLVQFAKSSTERMNLLNAEIEALNADLKAAINAYRDLLRRDTLRFLEAPHPTETEKTSE*
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