Scaffold Ga0007854

Basic Information
Taxon OID	3300004806 Open in IMG/M
Scaffold ID	Ga0007854_10001354 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004806 Open in IMG/M

Scaffold ID

Ga0007854_10001354 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15571
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (92.59%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	14 (100.00%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

15571

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (92.59%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

14 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F010891	Metagenome	297	Y
F023510	Metagenome	209	N
F025900	Metagenome	199	N
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N
F056263	Metagenome	137	N
F062380	Metagenome	130	N
F085038	Metagenome	111	N
F089728	Metagenome	108	N
F100248	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0007854_1000135410	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPAAAMEKTLQTVLARPAKPKFRRVAPEVNHSSVRCVGLDKLKF*
Ga0007854_1000135411	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGVCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLMLWTVFAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0007854_1000135412	F062380	GAGG	MPSDFNDFECNDFEKLLFADPGTTGACKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWATQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0007854_1000135414	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGQPVGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVESIAEALASAA*
Ga0007854_1000135415	F025900	AGGAG	VPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAADTIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRRQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEEASAEQVNTDPFPDGEFGKEAA*
Ga0007854_1000135416	F056263	AGGAG	MAAVITAEVSTPWLQQAGLKIRSWHGTGMSTFNAWRQHRDQDALENALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVNRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNVGHNWVMHLFTNLIH*
Ga0007854_1000135418	F005296	AGGA	MPIWLLWLLPSYEAGFWSALIASKLRDRGKTRELLVYGRPARTCLPILDERLRKAAGTPTKSQALVARWITTSLRWLANTRAMEYAILLGLKRVWPKGQTICTEVKLCL*
Ga0007854_1000135419	F009261	AGGAG	MILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDKNKGISLLGLETINFGIHGITNPNSVMFALGNTILNIFMLWVFLPFRMASAAKKHTMSVLKGVA*
Ga0007854_1000135420	F100248	GGA	MTKLSILAILSLAFIGVTRLAQFVLSLFVIVFFGFTTFELIRTFRQPAKRQYAA*
Ga0007854_1000135421	F085038	GGAGG	MKLIFGFLLFVAIVAITGGLYLIIRKEDDKKCDLQRLYSLPSQIARRVQSLGDYLFSLFCSKPEVNNEHPTAGVTAAA*
Ga0007854_1000135424	F089728	GGAGG	MKPIVMLWAAAIAIVGSCLFWRNRRRYRRKAFLWVAMKSAVELLILFLVAALMPALLIVWLVVWVTRPIKTPWVRTIVGVLSGVVFGIFSSFALEALIFFGIFAIDLKTGAHDGGFLHCWKRAREEDADRHSTILMPEAQAA*
Ga0007854_100013543	F023510	AGG	VALWYIEDRDHAGNMVKPIDPWPAPGPNSHIFFKVTAVNPNHYGIPPTTFIVEALNEEVAVECIKRAIWAGILLPHSYNGALNPWPSYFQSNALRYLLDGMFVAEELETLPTLRFFPDPCIRDEWLRYQLSWMARLVEDIQKWWDAMLARPFFTSWFGR*
Ga0007854_100013544	F010891	AGGAG	MTTKKQLTPEQRAMLNEIVNGAFSSIAIHFIGDNLAKGIHYAADATQRTTDVTARAAGTAQVCAIPAAKQAWTGFTGLFAKKTAATPASL*
Ga0007854_100013548	F031336	AGGAG	VLNGDVIILNPPKDPSWFSDASQSVSLFFWEHSDLIPLLMAEVALAVLIFAGFFWWECRKSKQVDQVGELERMYSAEPIPWSR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007854_10001354

Overview

Ecosystem & Geography

Associated Families

Sequences