Scaffold Ga0070914_100385

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070914_100385

Scaffold Ga0070914_100385

Overview

Basic Information
Taxon OID	3300004819 Open in IMG/M
Scaffold ID	Ga0070914_100385 Open in IMG/M
Source Dataset Name	Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - HQ1 dirigido Enero 2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1377
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Lake → Hypersaline Lake Viral Communities From Bras Del Port, Santa Pola, Alicante, Spain

Source Dataset Sampling Location
Location Name	Santa Pola Alicante
Coordinates	Lat. (^o)	38.19317	Long. (^o)	-0.59268	Alt. (m)		Depth (m)	56.6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072017	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070914_1003852	F072017	GGA	MSLNQTPSLKPQSDTNVKSTVHKHDAIHRLTQEHIDVFTADDRLLDFYEWQQVIRSSETTVRRLAYDEVQQ*

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