Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1190717 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1190717 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26651
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (22.73%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

26651

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (22.73%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030253	Metagenome	186	Y
F030897	Metagenome / Metatranscriptome	184	N
F046025	Metagenome / Metatranscriptome	152	N
F046651	Metagenome / Metatranscriptome	151	N
F047926	Metagenome / Metatranscriptome	149	N
F058949	Metagenome	134	N
F095404	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119071712	F046651	N/A	MKITLTKKVTSPSGKKLAKGLTLSVVNEYGKELIEAGKAVKFGEEAPAEAPQVIEEEQINLN*
Ga0073579_119071724	F030897	N/A	MQVEAGVLHLEHSGLEIEVSVVWDLVQGGPIYALKGDKVFMSLTAEELKALYVLYRDIELKGKIEDA*
Ga0073579_119071731	F095404	N/A	MFLTNYTTDKVKLAFMYVEMLRSNWGNLDDERKQQLLKQISELTNVDFITQEFESKL*
Ga0073579_119071734	F030253	N/A	MLKKYFRKQLHKRYVSKYLAETRWEIINTVIVASATEYNYEVQKHLKNLGGLVRKYERRSRWLKF*
Ga0073579_119071742	F047926	N/A	MWIEIAKNTWAQARNEKDAERIKKKWKDYKKKQGDLTSRHYIVNYIENENTIK*
Ga0073579_119071744	F058949	N/A	MFNNNSYEYKKAIRAKAAKAFGPTIKLDLFLEFIGFWDAREYKNANEIRTEAKDMHLYKVVSYMNQYTDG*
Ga0073579_11907177	F046025	N/A	LYEGYFNQAIAGVDFHYRKGQVEVLPAAVAQRYLNAGFCSVVEEKKAAKAERAVSKKTTKRTTRKAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1190717

Overview

Ecosystem & Geography

Associated Families

Sequences