NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065711_1041157

Scaffold Ga0065711_1041157


Overview

Basic Information
Taxon OID3300005287 Open in IMG/M
Scaffold IDGa0065711_1041157 Open in IMG/M
Source Dataset NameHoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16367
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (48.39%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Archosauria → Dinosauria → Saurischia → Theropoda → Coelurosauria → Aves → Neognathae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Crop → Lumen → Hoatzin Crop → Hoatzin Crop Microbial Communities From Cojedes, Venezuela

Source Dataset Sampling Location
Location NameCojedes, Venezuela
CoordinatesLat. (o)8.956944Long. (o)-68.299167Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004001Metagenome457Y

Sequences

Protein IDFamilyRBSSequence
Ga0065711_10411572F004001AGAAGLHWNRLPREAVESPPLEMLKKYVDVALQTWFKRHGGDGLVVGLDDLGGLFQP*

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