NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065707_10709426

Scaffold Ga0065707_10709426


Overview

Basic Information
Taxon OID3300005295 Open in IMG/M
Scaffold IDGa0065707_10709426 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)632
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050409Metagenome / Metatranscriptome145Y
F074732Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0065707_107094261F074732N/AIGTSIRKIQQEREQVKKMVQAQLDTLRWIKTQKGEVIPFLQKFFTLDEPTAVEAHAIYARLIIDDARPLAEPVKTVLDQQGKPDLPLDRVVDPTIVEEVLRERR*
Ga0065707_107094262F050409GGAGMPDLRIIDIDGHVREADDLFEKYLEAPFQDRTPRVEKVANGQLLFRLEGDRHHRKPDETPFRIKADGSPANENRHLATNPKQRLTAMDRDRIERGLLFPSAALY
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