NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066388_100498071

Scaffold Ga0066388_100498071


Overview

Basic Information
Taxon OID3300005332 Open in IMG/M
Scaffold IDGa0066388_100498071 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1855
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037547Metagenome167Y
F052963Metagenome142N
F057518Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0066388_1004980711F057518N/AVSKNFSTINICDFEYEVEPGGLPSVLCMVVRVLNENLQHVRTIRMWRGEFGS
Ga0066388_1004980712F052963AGGAGGMANIKTVEVEKVEKTEENILIPKPGEFDLNKFKAKQTATVANVETLQSPLPVHNMAAAKDFVRLHPDEQNYWSDELCFMDVPIKGQKRNTLHLIVEDLALRYLEAGEIKRFRLALASKPNDVFFLCEIPTQNLDNSWNDTNLEACGKAKMLWTKAISRKSEGVESYKITFAKEPDAFRDPDWPKQSLGELIARAFAGRTIETEDHPALLRKIGAKQSLS*
Ga0066388_1004980713F037547GGAMEQRAELEGRQVKCLIASEGHLWMQGYFDRFPSVVRRRLAESAFNICPACMDKEAHAAARQRKETKPSEGTYLLVIKTIERKLKQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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