NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068869_101618410

Scaffold Ga0068869_101618410


Overview

Basic Information
Taxon OID3300005334 Open in IMG/M
Scaffold IDGa0068869_101618410 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029681Metagenome187Y
F077143Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0068869_1016184101F029681GAGMKTYISRIAVAASLGMFALPALTPSAEPQTRPWWFYGCPKGVRAQIPGDVPGPGTAGWSQYQSCLQQNLSLSPQQSAQIAPILANEGQKVITIRNNNSLSDAQK
Ga0068869_1016184102F077143GAGMVTFTVLSPAECTPKALADFESLVREGQTVDPEGLTQRISDAHRLLFLRESNG

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