Scaffold Ga0074216_1121

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074216_1121

Scaffold Ga0074216_1121

Overview

Basic Information
Taxon OID	3300005369 Open in IMG/M
Scaffold ID	Ga0074216_1121 Open in IMG/M
Source Dataset Name	Human periodontal pocket microbial communities from Stanford, California, USA - TM7c
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4070
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Periodontal Pockets → Human Oral → Human Periodontal Pocket Microbial Communities From Stanford, California, Usa

Source Dataset Sampling Location
Location Name	Stanford, California, USA
Coordinates	Lat. (^o)	37.429308	Long. (^o)	-122.169514	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095633	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074216_11212	F095633	AGGAG	MRNCENFTEVGRGEGLTEGELRTMGTLAMKATEELKKTTIRKEAVLLGDVPFDSWDEFAKAVQEMAGYSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFINLSRTRCVVDADRSHKSYKFTCPALKKYPSGELYPIREVYVISAIDANGSQEVDFKIIQGGLN*

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