NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070708_100322214

Scaffold Ga0070708_100322214


Overview

Basic Information
Taxon OID3300005445 Open in IMG/M
Scaffold IDGa0070708_100322214 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1456
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039251Metagenome / Metatranscriptome164Y
F044076Metagenome / Metatranscriptome155Y
F080438Metagenome / Metatranscriptome115Y
F086069Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0070708_1003222142F044076AGGAGMYISLKDSCAKGFKKWADTHQPEIKNDLRASRGNRLTAASTDQDNLVMTSLERTHRPWPVPDAGTL*
Ga0070708_1003222143F039251GGAGMADARQLRLDSERAFRLSRAGCREFFDELNDLGWDLQLQTQKVEREAQKLKELKRQLGLP
Ga0070708_1003222144F080438AGGTGGMYSPELLRVEAAECRRGAIGKSIRVERTLLALAERLEAQATVLEARETADRPLRQEIMRKFPTS*
Ga0070708_1003222145F086069GAGMEKPASTWSFDHGALTVHHLGKTVSLGRYATHEFAAKAAAVYFAKQQARKKPSALRSASAAAGVLSKK*
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