Scaffold Ga0073906_1047255

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073906_1047255

Scaffold Ga0073906_1047255

Overview

Basic Information
Taxon OID	3300005461 Open in IMG/M
Scaffold ID	Ga0073906_1047255 Open in IMG/M
Source Dataset Name	Mouse cecum microbial communities from Vienna, Austria - Inoculum for glucosamine and mucus D2O microcosms
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1635
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Mouse Cecum → Mouse Cecum Microbial Communities From Vienna, Austria

Source Dataset Sampling Location
Location Name	Austria: Vienna
Coordinates	Lat. (^o)	48.2	Long. (^o)	16.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073906_10472551	F051936	N/A	EQEGTGQVLFFPLALRGKAFGFNMLQEHAVMTPAISISFKTLIIKYLSIYISIKK*

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