NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070730_10000001

Scaffold Ga0070730_10000001


Overview

Basic Information
Taxon OID3300005537 Open in IMG/M
Scaffold IDGa0070730_10000001 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613115
Total Scaffold Genes580 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)439 (75.69%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001426Metagenome / Metatranscriptome697Y
F002530Metagenome / Metatranscriptome551Y
F003382Metagenome / Metatranscriptome490Y
F024147Metagenome / Metatranscriptome207Y
F025792Metagenome / Metatranscriptome200Y
F041878Metagenome / Metatranscriptome159N
F061595Metagenome / Metatranscriptome131Y
F096632Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0070730_10000001159F041878AGGAGGMEYAQLIQAAASIAGGMAAAHYDKFSGLVATRITDIAETAVKIARAIDAEAQKQP*
Ga0070730_10000001182F002530N/AMSRDDEDRILHGLYYYRENIDEDVQVSGEQLLWLAMHPLREGEAWHRDGKLQSLDTSAFPEEVRGKLITAKLELPLRYLQYRRLITYARRSDGMFYAAVTFAGADRAIRLHTRRGRMDLWYREHRDGVLGMSITVLISLITALLTVIVTTKLLKP*
Ga0070730_10000001190F025792N/AMIHPVWRLIAPALTLTAGLLRPDMGAAQTPEQEKLWEAQRAQSQAEQKAKAELLASQRAARRADPMAWVRTLNPLGEGGWQFRAVAADGSWAAFSTEHQMKRSGRLITAWLRQEYPEPQRNSAGDIYFSYVEKIQFDCANERARALLIIYYSDNNITGSESSEATDVKQAVWVPIVPGTPSENIYQWACEVANGKAHS*
Ga0070730_10000001394F096632N/AMTLSAFLKEPLEGKTSLSRVVWLYGVVGSLLIGAVELFLDPENQFVMRVYTILGFFFGMYVTLATYRCAKNSKSPLLARVVRISAVLTLLLLPVLTYLELTGALSLTGLMQDPLLE*
Ga0070730_10000001411F061595GAGGMSTSHRQTSCPTIAYSAVMQRVTHPDPDLELEFIREFSVRGEQLMAAATDDRRERIRIAIYVQNLVHQPFRDTGMDYAAAYHKCYGRPIEMRRTVRPQLKPRADTASEH*
Ga0070730_1000000156F024147AGGCGGMASDFKKPADDASFTFAVNELRWAEAAQTLSLDPGPKKPSYREQGSDPYNSSGSFDRTKHWTRVGKR*
Ga0070730_1000000158F003382GGAGVRDSTPAGRGAGIRLQLCMAFDLRSFAKSSPWAAELAAAAAGLLLGVALMPVLIFYAGLATLGRYEGASLGRLYSSLFEGLHDASIASWVVLLGPYGLYLLLRALRGWWRASAKLY*
Ga0070730_1000000159F001426N/AMSWTPQRLYELKPWAFMGAGALLGIGMMLWSLWAGLWTVWRGLLCLGGVGLTVVGGATLQMRQDYRAKSKWRRDAPP*
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