NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10004395

Scaffold Ga0078894_10004395


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10004395 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10778
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002301Metagenome / Metatranscriptome573Y
F029728Metagenome / Metatranscriptome187Y
F083919Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_1000439512F029728AGGAGMYLNPITVDGTTYNFTEESLKELIKTDIATKRRLDAVSTEAQEAYRKLMKVRTEVHAYFTEAFDGSVDEDETTVTRDEVNALLESIGSDMLTTTWCATVEITVNITGIKATSKEEAEDIINDNIEVSGYDLDIDSHDVSISEIERE*
Ga0078894_1000439521F002301AGAAGGVDYLEEYEQMVVAVAAEYQRKYPMTDQQDIQQVLWIWFVSHPVKYKEWSALPQKDKDKLIAKSLRNKAITYCEREKARTVGYELLDLYYYDASVIEAFLPSIISESYEIPTKIKDLNFKFTKGESTDTNNWLVLRSDIATAYYRLSEAKQFILKTRFSTESCEWSKLGEELNTTPDGARMKVQRAVSSLIRNLGGYRPHLDEDSSVEVEDDESGE*
Ga0078894_100043957F083919AGGAGGMSYEPTLEDDVALDKDTEEEDDGYQEPDRMWGDE*
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