NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076927_145973

Scaffold Ga0076927_145973


Overview

Basic Information
Taxon OID3300005737 Open in IMG/M
Scaffold IDGa0076927_145973 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074032Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0076927_1459731F074032N/ALTDLNESVLKSSDRLGMKILDASSFDKYLYGAGERGYRVALKEIFGDNFVGNLDNLNKALQISARRQPPKSMGVFGSAFSDIIRARLGQFTLSGRLFTASRRIYAKAAERVMANALLNPTSLKELISLRNFKPNTKEAIAILSKLDGSIFIKDNFEESKPFTAIANTLFGDARNN*
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