NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074475_10786837

Scaffold Ga0074475_10786837


Overview

Basic Information
Taxon OID3300005828 Open in IMG/M
Scaffold IDGa0074475_10786837 Open in IMG/M
Source Dataset NameMicrobial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameIlwaco, Washington, USA
CoordinatesLat. (o)46.30247Long. (o)-123.03645Alt. (m)Depth (m).02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094605Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0074475_107868371F094605N/AMNHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS*
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