Scaffold Ga0074469_10558439

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074469_10558439

Scaffold Ga0074469_10558439

Overview

Basic Information
Taxon OID	3300005832 Open in IMG/M
Scaffold ID	Ga0074469_10558439 Open in IMG/M
Source Dataset Name	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	766
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Ilwaco, Washington, USA
Coordinates	Lat. (^o)	46.28551	Long. (^o)	-124.05187	Alt. (m)		Depth (m)	.06
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034234	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074469_105584392	F034234	AGGA	MEPDVQPEVIALLFPENAPAAVGAVPLVTALLRDAEGFMQLRHVKPDPALLRKARVAGRMNGGTPIVDPLTREVIGCEIEPITDVAR*

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